miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 26260 0.66 0.322051
Target:  5'- aCGCCaGaGCcaGCGCCACGcCCgcagCGGCCa -3'
miRNA:   3'- -GUGGaC-CG--CGCGGUGCaGGag--GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 13127 0.66 0.322051
Target:  5'- gCGCUUGGaCGCGCUgacCGUCUUguuguaggcaUCGGCCa -3'
miRNA:   3'- -GUGGACC-GCGCGGu--GCAGGA----------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10958 0.66 0.317412
Target:  5'- uCAUCUGGCGauaCGCCuugaccuucgcgaagGCGUCCUCgAcgugcGCCc -3'
miRNA:   3'- -GUGGACCGC---GCGG---------------UGCAGGAGgU-----CGG- -5'
23032 5' -61.6 NC_005178.1 + 20399 0.66 0.314348
Target:  5'- uGCCUcGGuCGUGCCu--UCUUCCAGCg -3'
miRNA:   3'- gUGGA-CC-GCGCGGugcAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 7223 0.66 0.314348
Target:  5'- gACa-GGCGCGgCACGcUUUCCAGCa -3'
miRNA:   3'- gUGgaCCGCGCgGUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 18080 0.66 0.314348
Target:  5'- gCAgCUGGCGaaccuGCCGCagcgCCUggcCCAGCCc -3'
miRNA:   3'- -GUgGACCGCg----CGGUGca--GGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 33907 0.66 0.306786
Target:  5'- gCGCCUGGCGgcgaUGCUcgGCGgCCggugCCGGCUu -3'
miRNA:   3'- -GUGGACCGC----GCGG--UGCaGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16339 0.66 0.306786
Target:  5'- -uCCUGG-GCGgCACGcUCa-CCAGCCa -3'
miRNA:   3'- guGGACCgCGCgGUGC-AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 5489 0.66 0.306786
Target:  5'- cCGCgUGGCGCGCCGC----UCCAaCCa -3'
miRNA:   3'- -GUGgACCGCGCGGUGcaggAGGUcGG- -5'
23032 5' -61.6 NC_005178.1 + 30488 0.66 0.306786
Target:  5'- aGCUcguUGGCGC-UCGCGUCgaUCAGCCc -3'
miRNA:   3'- gUGG---ACCGCGcGGUGCAGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22345 0.66 0.299364
Target:  5'- gACCUuccGGCGUGCUggcuucGCGUUCaCCAGCg -3'
miRNA:   3'- gUGGA---CCGCGCGG------UGCAGGaGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 10636 0.66 0.292082
Target:  5'- aGCC-GGgGCGCaACG-CC-CCGGCCg -3'
miRNA:   3'- gUGGaCCgCGCGgUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 1700 0.67 0.277934
Target:  5'- uGCgUGGCG-GCCGCGUggCUuaCGGCCg -3'
miRNA:   3'- gUGgACCGCgCGGUGCA--GGagGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 36162 0.67 0.277934
Target:  5'- aACCUGG-GCGgCAUGUaCUCCcagauAGCCg -3'
miRNA:   3'- gUGGACCgCGCgGUGCAgGAGG-----UCGG- -5'
23032 5' -61.6 NC_005178.1 + 2906 0.67 0.264338
Target:  5'- gACaUGGCGCGCCuCGgCCaggUCgAGCCg -3'
miRNA:   3'- gUGgACCGCGCGGuGCaGG---AGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 1755 0.67 0.264338
Target:  5'- aGCCacgcGGC-CGCCACGcacaUCgaCCAGCCa -3'
miRNA:   3'- gUGGa---CCGcGCGGUGC----AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 34894 0.67 0.264338
Target:  5'- aGCCcgguggUGGCgGCGCCACG-CCgguugucgCCGGCa -3'
miRNA:   3'- gUGG------ACCG-CGCGGUGCaGGa-------GGUCGg -5'
23032 5' -61.6 NC_005178.1 + 3193 0.67 0.263673
Target:  5'- uGCaugGGCagcgcggGCGCUGCGcUUCUCCGGCCc -3'
miRNA:   3'- gUGga-CCG-------CGCGGUGC-AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4707 0.67 0.257745
Target:  5'- -cCCUGGagaaaGCGCUgucGCGUaCCUCCAcguuGCCc -3'
miRNA:   3'- guGGACCg----CGCGG---UGCA-GGAGGU----CGG- -5'
23032 5' -61.6 NC_005178.1 + 27497 0.67 0.257745
Target:  5'- cCGCCgUGGUggaacuuuugucGCGCaGCG-CCUCCAGCg -3'
miRNA:   3'- -GUGG-ACCG------------CGCGgUGCaGGAGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.