miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 12990 1.09 0.000135
Target:  5'- gCACCUGGCGCGCCACGUCCUCCAGCCc -3'
miRNA:   3'- -GUGGACCGCGCGGUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18405 0.68 0.226781
Target:  5'- cCGCCaGGCGCuCCugGaCCUCgCGGUCc -3'
miRNA:   3'- -GUGGaCCGCGcGGugCaGGAG-GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 11871 0.68 0.236939
Target:  5'- uCACCagGGCG-GCCAgggUGUCCUgguccaugugcaggCCGGCCu -3'
miRNA:   3'- -GUGGa-CCGCgCGGU---GCAGGA--------------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 26260 0.66 0.322051
Target:  5'- aCGCCaGaGCcaGCGCCACGcCCgcagCGGCCa -3'
miRNA:   3'- -GUGGaC-CG--CGCGGUGCaGGag--GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10397 0.72 0.10951
Target:  5'- aGCCcGGCGCGCUuCGccCCUCCGcGCCc -3'
miRNA:   3'- gUGGaCCGCGCGGuGCa-GGAGGU-CGG- -5'
23032 5' -61.6 NC_005178.1 + 21974 0.72 0.119014
Target:  5'- gGgUUGGUGagcagcaucuuCGCCACGUCUUCCAGCg -3'
miRNA:   3'- gUgGACCGC-----------GCGGUGCAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 2960 0.71 0.129282
Target:  5'- gGCCgaGGCGCGCCAUGUCC---AGCa -3'
miRNA:   3'- gUGGa-CCGCGCGGUGCAGGaggUCGg -5'
23032 5' -61.6 NC_005178.1 + 19887 0.71 0.132883
Target:  5'- -uCCaGGCGCuGCC--GUCCUCCAGCUu -3'
miRNA:   3'- guGGaCCGCG-CGGugCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35675 0.7 0.169669
Target:  5'- gACCUGGaGCGUCAcCGUCgCcCCAGCUu -3'
miRNA:   3'- gUGGACCgCGCGGU-GCAG-GaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 33953 0.68 0.215304
Target:  5'- cCGCCaGGCGCGgcaggacgcCCugGUCCUCUucaCCg -3'
miRNA:   3'- -GUGGaCCGCGC---------GGugCAGGAGGuc-GG- -5'
23032 5' -61.6 NC_005178.1 + 35415 0.69 0.178997
Target:  5'- gGCCUGGaGCGUCACG-CC-CUGGCUg -3'
miRNA:   3'- gUGGACCgCGCGGUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 27059 0.7 0.156491
Target:  5'- uCugCUGGcCGCguauuGCCuCGUCCUCCAGgUa -3'
miRNA:   3'- -GugGACC-GCG-----CGGuGCAGGAGGUCgG- -5'
23032 5' -61.6 NC_005178.1 + 35229 0.84 0.013377
Target:  5'- gGCCUGGcCGacaGUgACGUCCUCCAGCCg -3'
miRNA:   3'- gUGGACC-GCg--CGgUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30893 0.69 0.178997
Target:  5'- uCACCUcuaccGGCugauGCGCCGCGUagaCgCCGGCCc -3'
miRNA:   3'- -GUGGA-----CCG----CGCGGUGCAg--GaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4132 0.74 0.080428
Target:  5'- cCACCUGGU-CGCCGUGgaauUCCUCCAGCUc -3'
miRNA:   3'- -GUGGACCGcGCGGUGC----AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18581 0.71 0.140363
Target:  5'- gACCUGgagaaucggguGCGCGCCGCGccCCUUC-GCCg -3'
miRNA:   3'- gUGGAC-----------CGCGCGGUGCa-GGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 28460 0.68 0.204329
Target:  5'- uCGCUggucGGUGUGCCugGUCCcuggacCUGGCCg -3'
miRNA:   3'- -GUGGa---CCGCGCGGugCAGGa-----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 9967 0.68 0.226781
Target:  5'- aAUCUGGCGCgGCCcuaaGUCCU-UGGCCg -3'
miRNA:   3'- gUGGACCGCG-CGGug--CAGGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 24499 0.73 0.095234
Target:  5'- gACC-GGCGCGCCg---CCUUCGGCCa -3'
miRNA:   3'- gUGGaCCGCGCGGugcaGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12868 0.71 0.129282
Target:  5'- aCGCCgaacaUGGCG-GCCGCGaCCUCCAgggacuGCCg -3'
miRNA:   3'- -GUGG-----ACCGCgCGGUGCaGGAGGU------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.