Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 27513 | 0.66 | 0.477634 |
Target: 5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3' miRNA: 3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 13185 | 0.66 | 0.467467 |
Target: 5'- uGGCCaGGCGCUggagCACCuccauagCGGUGg -3' miRNA: 3'- -CCGGcUCGCGAa---GUGGucga---GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16070 | 0.66 | 0.467467 |
Target: 5'- -cCCGAGCGCga-ACgCGGCUU-GUGCa -3' miRNA: 3'- ccGGCUCGCGaagUG-GUCGAGcCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16891 | 0.66 | 0.457413 |
Target: 5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3' miRNA: 3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 28474 | 0.66 | 0.457413 |
Target: 5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3' miRNA: 3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9723 | 0.66 | 0.456414 |
Target: 5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3' miRNA: 3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 21236 | 0.66 | 0.447475 |
Target: 5'- cGGCCGGcCGCaUCAUCGGCgucgaacCGGacgGCg -3' miRNA: 3'- -CCGGCUcGCGaAGUGGUCGa------GCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9944 | 0.66 | 0.447475 |
Target: 5'- uGGCCGAGCGCa-CGCCcGCgacgCGa-GCg -3' miRNA: 3'- -CCGGCUCGCGaaGUGGuCGa---GCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 20581 | 0.66 | 0.447475 |
Target: 5'- --aCGGGCGCccacUUCGCCGGgUCGGgGUu -3' miRNA: 3'- ccgGCUCGCG----AAGUGGUCgAGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 17834 | 0.66 | 0.444518 |
Target: 5'- aGGCCGAGCGCacccugggagCGCCuGCcgcccUCGGcgagguccaggacgUGCu -3' miRNA: 3'- -CCGGCUCGCGaa--------GUGGuCG-----AGCC--------------ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 12359 | 0.66 | 0.437659 |
Target: 5'- cGGCagGcAGCGCgaUCACCAGCgguuUCGGccaggGCa -3' miRNA: 3'- -CCGg-C-UCGCGa-AGUGGUCG----AGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 35172 | 0.66 | 0.437659 |
Target: 5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3' miRNA: 3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10592 | 0.66 | 0.427968 |
Target: 5'- cGGCCGAGCGa---GCCGGCacCGcaGCa -3' miRNA: 3'- -CCGGCUCGCgaagUGGUCGa-GCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 25575 | 0.67 | 0.418404 |
Target: 5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3' miRNA: 3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 751 | 0.67 | 0.418404 |
Target: 5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3' miRNA: 3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10430 | 0.67 | 0.418404 |
Target: 5'- -cUCGAuGuCGCUgccCACCAGCUCGGccaGCg -3' miRNA: 3'- ccGGCU-C-GCGAa--GUGGUCGAGCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8570 | 0.67 | 0.408972 |
Target: 5'- -uCCG-GCGCUUCGCCGa--CGGUGUa -3' miRNA: 3'- ccGGCuCGCGAAGUGGUcgaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10327 | 0.67 | 0.408972 |
Target: 5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3' miRNA: 3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 22107 | 0.67 | 0.408972 |
Target: 5'- gGGCUGgaAGaugaacgGUUUUACCGGCUUGGUGg -3' miRNA: 3'- -CCGGC--UCg------CGAAGUGGUCGAGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 32134 | 0.67 | 0.403377 |
Target: 5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3' miRNA: 3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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