miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 4597 0.66 0.17116
Target:  5'- gGGCGGCgucCGGCuCGAugGGCaGGCCGGa -3'
miRNA:   3'- -UCGUCG---GCCG-GCUcgUCGcCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 31666 0.66 0.17116
Target:  5'- aGGUGGCCuGGaCgGGGCGGaccagguccaGGCCGGCg -3'
miRNA:   3'- -UCGUCGG-CC-GgCUCGUCgc--------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 15484 0.66 0.169376
Target:  5'- cAGCAGCUGcGCa-AGCAGCagaccgcgcaccuGGCCGGUc -3'
miRNA:   3'- -UCGUCGGC-CGgcUCGUCGc------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 28306 0.66 0.16673
Target:  5'- gAGCuGCCggGGCCGcuggaguggcuGGUGGCGGGagUGGCu -3'
miRNA:   3'- -UCGuCGG--CCGGC-----------UCGUCGCCCg-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 13092 0.66 0.16673
Target:  5'- cGGCcaGGCUGGCC-AGCAGCugcaccuucacGGCgGGCu -3'
miRNA:   3'- -UCG--UCGGCCGGcUCGUCGc----------CCGgCCG- -5'
23042 5' -66.4 NC_005178.1 + 8665 0.66 0.16673
Target:  5'- --uGGCCGGagacuuCCGGcgagcgcgugguGCAGUugGGGCCGGCu -3'
miRNA:   3'- ucgUCGGCC------GGCU------------CGUCG--CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 7352 0.66 0.16673
Target:  5'- gAGCAGCCGGgCGgcgucguugaAGguGCGcaGGCUcugGGCc -3'
miRNA:   3'- -UCGUCGGCCgGC----------UCguCGC--CCGG---CCG- -5'
23042 5' -66.4 NC_005178.1 + 10709 0.66 0.166293
Target:  5'- cGGCGcggagacGCCGGCCgGGGCGuuGCGccCCGGCu -3'
miRNA:   3'- -UCGU-------CGGCCGG-CUCGU--CGCccGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 19469 0.66 0.162403
Target:  5'- gAGCAGCuCGGCUGcGCgccguuGGCugauGCCGGCu -3'
miRNA:   3'- -UCGUCG-GCCGGCuCG------UCGcc--CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 11978 0.66 0.162403
Target:  5'- -cCGGCCuaGCCcuGguGCGGGCUGGUa -3'
miRNA:   3'- ucGUCGGc-CGGcuCguCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 16607 0.66 0.161976
Target:  5'- aGGuCGGCCcgguccuugaGGUCGAagaccagGCGGgGGGCgCGGCg -3'
miRNA:   3'- -UC-GUCGG----------CCGGCU-------CGUCgCCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 1517 0.66 0.161125
Target:  5'- gGGCGGCguaguugcacucacCaGGUauAGC-GCGGGCCGGCu -3'
miRNA:   3'- -UCGUCG--------------G-CCGgcUCGuCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 3938 0.66 0.15776
Target:  5'- cGGCGGCCGGUguucgggucaaCGAugcgcggcaagcuGCuGUGcGGCCGGUc -3'
miRNA:   3'- -UCGUCGGCCG-----------GCU-------------CGuCGC-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 22985 0.66 0.154051
Target:  5'- cAGCGGCa-GCUG-GUAGCGGGCgugcaGGUg -3'
miRNA:   3'- -UCGUCGgcCGGCuCGUCGCCCGg----CCG- -5'
23042 5' -66.4 NC_005178.1 + 21092 0.66 0.154051
Target:  5'- cGCGGCCcagguaggucaGGCCG-GUGGCGGuGCugccgcccaCGGCg -3'
miRNA:   3'- uCGUCGG-----------CCGGCuCGUCGCC-CG---------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 7485 0.66 0.154051
Target:  5'- uGCuGCCGGCCGAgGCGuCGcGCUGGa -3'
miRNA:   3'- uCGuCGGCCGGCU-CGUcGCcCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 9046 0.66 0.150023
Target:  5'- gAGCAauGCCGcGCCGcGCucGCGGucaCCGGCc -3'
miRNA:   3'- -UCGU--CGGC-CGGCuCGu-CGCCc--GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 4519 0.66 0.150023
Target:  5'- gAGCGGUCGGCaGGGUgaagaccugGGCGGuGgUGGCu -3'
miRNA:   3'- -UCGUCGGCCGgCUCG---------UCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 29861 0.67 0.146091
Target:  5'- cGCAGCUuGgCGAGCaAGUcGGCCGGg -3'
miRNA:   3'- uCGUCGGcCgGCUCG-UCGcCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 2925 0.67 0.144929
Target:  5'- gAGCGuuuCCGGCUGuAGCcgguGCGGGCCaucaucaggucuagGGCg -3'
miRNA:   3'- -UCGUc--GGCCGGC-UCGu---CGCCCGG--------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.