Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 18451 | 0.66 | 0.216597 |
Target: 5'- aUGCCGCGCau-CAGCGGCagggugucgguuacaGCCGCg -3' miRNA: 3'- cGCGGUGCGggcGUCGCCGg--------------UGGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 24198 | 0.66 | 0.216048 |
Target: 5'- aGUaCCuCGCCCGUcaCGGagcCCGCCGCCu -3' miRNA: 3'- -CGcGGuGCGGGCGucGCC---GGUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 30276 | 0.66 | 0.216048 |
Target: 5'- -aGCgGCGgCgGCAGCGuGCUGCgGCUa -3' miRNA: 3'- cgCGgUGCgGgCGUCGC-CGGUGgCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 27429 | 0.66 | 0.215501 |
Target: 5'- gGCGCUGCGCgacaaaaguuccaCCaCGGCGGCCcAgCGCa -3' miRNA: 3'- -CGCGGUGCG-------------GGcGUCGCCGG-UgGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 12229 | 0.66 | 0.210629 |
Target: 5'- aGCGCCugGCCa--AGCGGgCCGacagCGaCCa -3' miRNA: 3'- -CGCGGugCGGgcgUCGCC-GGUg---GC-GG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 13672 | 0.66 | 0.210629 |
Target: 5'- aGCGUgagCAUGCuCUGCguaaugucAGUGGCCgccuugauGCCGCCg -3' miRNA: 3'- -CGCG---GUGCG-GGCG--------UCGCCGG--------UGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 18245 | 0.66 | 0.210629 |
Target: 5'- aCGCCAC-CgCGCAGCcGa-ACCGCCa -3' miRNA: 3'- cGCGGUGcGgGCGUCGcCggUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 13885 | 0.66 | 0.210629 |
Target: 5'- aGCGCCGC-CCgGCGuGaacgGGCCAgCGCg -3' miRNA: 3'- -CGCGGUGcGGgCGU-Cg---CCGGUgGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 3059 | 0.66 | 0.210093 |
Target: 5'- aGCGCUccaggcuGCGCaCGCucGGCaGGCCAuCCGCg -3' miRNA: 3'- -CGCGG-------UGCGgGCG--UCG-CCGGU-GGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 18357 | 0.66 | 0.209026 |
Target: 5'- aGCGCCugG-CgGCAcucuacGCGGCUguaaccgacacccuGCCGCUg -3' miRNA: 3'- -CGCGGugCgGgCGU------CGCCGG--------------UGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 16215 | 0.66 | 0.205327 |
Target: 5'- -gGCCAUG-CCGCAGCGGgCAuuauCC-CCg -3' miRNA: 3'- cgCGGUGCgGGCGUCGCCgGU----GGcGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 10642 | 0.66 | 0.205327 |
Target: 5'- gGCGCaACGCCC-CGGcCGGCgucuCCGCg -3' miRNA: 3'- -CGCGgUGCGGGcGUC-GCCGgu--GGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 25500 | 0.66 | 0.205327 |
Target: 5'- aGCGCUu--CCCGCuguugcagggaGGCGGCgacCAUCGCCu -3' miRNA: 3'- -CGCGGugcGGGCG-----------UCGCCG---GUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 5543 | 0.66 | 0.205327 |
Target: 5'- cUGCCuGCGCCUG-GGCGGCUA-CGUCg -3' miRNA: 3'- cGCGG-UGCGGGCgUCGCCGGUgGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 21782 | 0.66 | 0.202201 |
Target: 5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3' miRNA: 3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 399 | 0.66 | 0.200141 |
Target: 5'- uCGCCAuCGCacaGCAGaGGCuccauagaguCACCGCCa -3' miRNA: 3'- cGCGGU-GCGgg-CGUCgCCG----------GUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 37149 | 0.66 | 0.200141 |
Target: 5'- aCGCCAgguCGCCgaccgggaCGcCAGCGaguGCUGCCGCCu -3' miRNA: 3'- cGCGGU---GCGG--------GC-GUCGC---CGGUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 8775 | 0.66 | 0.199629 |
Target: 5'- uCGCCugGguguuccuCCCGCAGCucgaugaGGCCAUCGa- -3' miRNA: 3'- cGCGGugC--------GGGCGUCG-------CCGGUGGCgg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 11186 | 0.66 | 0.199629 |
Target: 5'- cGCGCUgauguggAUGCCaaacauuuucaGCAGCGcGgCGCUGCCg -3' miRNA: 3'- -CGCGG-------UGCGGg----------CGUCGC-CgGUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 32494 | 0.66 | 0.199629 |
Target: 5'- cGCGCCACgGCugaacugauacagCCGCAcCGGCUGCCcauCCg -3' miRNA: 3'- -CGCGGUG-CG-------------GGCGUcGCCGGUGGc--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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