miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 18451 0.66 0.216597
Target:  5'- aUGCCGCGCau-CAGCGGCagggugucgguuacaGCCGCg -3'
miRNA:   3'- cGCGGUGCGggcGUCGCCGg--------------UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 24198 0.66 0.216048
Target:  5'- aGUaCCuCGCCCGUcaCGGagcCCGCCGCCu -3'
miRNA:   3'- -CGcGGuGCGGGCGucGCC---GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30276 0.66 0.216048
Target:  5'- -aGCgGCGgCgGCAGCGuGCUGCgGCUa -3'
miRNA:   3'- cgCGgUGCgGgCGUCGC-CGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 27429 0.66 0.215501
Target:  5'- gGCGCUGCGCgacaaaaguuccaCCaCGGCGGCCcAgCGCa -3'
miRNA:   3'- -CGCGGUGCG-------------GGcGUCGCCGG-UgGCGg -5'
23050 3' -65.2 NC_005178.1 + 12229 0.66 0.210629
Target:  5'- aGCGCCugGCCa--AGCGGgCCGacagCGaCCa -3'
miRNA:   3'- -CGCGGugCGGgcgUCGCC-GGUg---GC-GG- -5'
23050 3' -65.2 NC_005178.1 + 13672 0.66 0.210629
Target:  5'- aGCGUgagCAUGCuCUGCguaaugucAGUGGCCgccuugauGCCGCCg -3'
miRNA:   3'- -CGCG---GUGCG-GGCG--------UCGCCGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 18245 0.66 0.210629
Target:  5'- aCGCCAC-CgCGCAGCcGa-ACCGCCa -3'
miRNA:   3'- cGCGGUGcGgGCGUCGcCggUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13885 0.66 0.210629
Target:  5'- aGCGCCGC-CCgGCGuGaacgGGCCAgCGCg -3'
miRNA:   3'- -CGCGGUGcGGgCGU-Cg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 3059 0.66 0.210093
Target:  5'- aGCGCUccaggcuGCGCaCGCucGGCaGGCCAuCCGCg -3'
miRNA:   3'- -CGCGG-------UGCGgGCG--UCG-CCGGU-GGCGg -5'
23050 3' -65.2 NC_005178.1 + 18357 0.66 0.209026
Target:  5'- aGCGCCugG-CgGCAcucuacGCGGCUguaaccgacacccuGCCGCUg -3'
miRNA:   3'- -CGCGGugCgGgCGU------CGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16215 0.66 0.205327
Target:  5'- -gGCCAUG-CCGCAGCGGgCAuuauCC-CCg -3'
miRNA:   3'- cgCGGUGCgGGCGUCGCCgGU----GGcGG- -5'
23050 3' -65.2 NC_005178.1 + 10642 0.66 0.205327
Target:  5'- gGCGCaACGCCC-CGGcCGGCgucuCCGCg -3'
miRNA:   3'- -CGCGgUGCGGGcGUC-GCCGgu--GGCGg -5'
23050 3' -65.2 NC_005178.1 + 25500 0.66 0.205327
Target:  5'- aGCGCUu--CCCGCuguugcagggaGGCGGCgacCAUCGCCu -3'
miRNA:   3'- -CGCGGugcGGGCG-----------UCGCCG---GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5543 0.66 0.205327
Target:  5'- cUGCCuGCGCCUG-GGCGGCUA-CGUCg -3'
miRNA:   3'- cGCGG-UGCGGGCgUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21782 0.66 0.202201
Target:  5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3'
miRNA:   3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 399 0.66 0.200141
Target:  5'- uCGCCAuCGCacaGCAGaGGCuccauagaguCACCGCCa -3'
miRNA:   3'- cGCGGU-GCGgg-CGUCgCCG----------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 37149 0.66 0.200141
Target:  5'- aCGCCAgguCGCCgaccgggaCGcCAGCGaguGCUGCCGCCu -3'
miRNA:   3'- cGCGGU---GCGG--------GC-GUCGC---CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8775 0.66 0.199629
Target:  5'- uCGCCugGguguuccuCCCGCAGCucgaugaGGCCAUCGa- -3'
miRNA:   3'- cGCGGugC--------GGGCGUCG-------CCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 11186 0.66 0.199629
Target:  5'- cGCGCUgauguggAUGCCaaacauuuucaGCAGCGcGgCGCUGCCg -3'
miRNA:   3'- -CGCGG-------UGCGGg----------CGUCGC-CgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 32494 0.66 0.199629
Target:  5'- cGCGCCACgGCugaacugauacagCCGCAcCGGCUGCCcauCCg -3'
miRNA:   3'- -CGCGGUG-CG-------------GGCGUcGCCGGUGGc--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.