miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 22945 0.67 0.180524
Target:  5'- --uCCGCGUCCGCaucGGCgauagccugGGCCacgACCGCCg -3'
miRNA:   3'- cgcGGUGCGGGCG---UCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26166 0.67 0.180524
Target:  5'- gGCGUugUugGCCgaCGCuGCGGCagcguCCGCCc -3'
miRNA:   3'- -CGCG--GugCGG--GCGuCGCCGgu---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6563 0.67 0.166948
Target:  5'- uGCG-CACGgUgGCGGCGGUgACCugGCCg -3'
miRNA:   3'- -CGCgGUGCgGgCGUCGCCGgUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 13179 0.67 0.166948
Target:  5'- gGCGCUggaGCaCCUccauaGCGGUGGCCAgCGCUg -3'
miRNA:   3'- -CGCGG---UGcGGG-----CGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 7173 0.67 0.171369
Target:  5'- gGCGCCGgcCGCUggagguacuCGCuGCacucgaccgaGGUCACCGCCu -3'
miRNA:   3'- -CGCGGU--GCGG---------GCGuCG----------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 19992 0.67 0.174525
Target:  5'- cGCGCU-CGaucaCUGCGGCGGCacuggcggcaucgauCCGCCa -3'
miRNA:   3'- -CGCGGuGCg---GGCGUCGCCGgu-------------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10867 0.67 0.175893
Target:  5'- aGCGUUacgACGCUCGCGGCugGGCU-CgGCCa -3'
miRNA:   3'- -CGCGG---UGCGGGCGUCG--CCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 13763 0.67 0.180524
Target:  5'- gGUGCCuACGgCgGCaucaaGGCGGCCACUGaCa -3'
miRNA:   3'- -CGCGG-UGCgGgCG-----UCGCCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 17726 0.67 0.180524
Target:  5'- uUGuCUACGCCCGUcucGaCGGUCACCugGCCg -3'
miRNA:   3'- cGC-GGUGCGGGCGu--C-GCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 34717 0.68 0.150274
Target:  5'- -gGCUACGggCGCGGCGGUCGaacaCGCCc -3'
miRNA:   3'- cgCGGUGCggGCGUCGCCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 28592 0.68 0.150274
Target:  5'- cGCGCCaucccuaccACGCCCaaGCA-UGGgCGCCGCUc -3'
miRNA:   3'- -CGCGG---------UGCGGG--CGUcGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 35408 0.68 0.149877
Target:  5'- aGCGUCACGCCCuggcuGUAGaccguuuCGuCCACCGCUu -3'
miRNA:   3'- -CGCGGUGCGGG-----CGUC-------GCcGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36547 0.68 0.150274
Target:  5'- -aGCCuuGCCCGCuacggGGUGGaguucuaUACCGCCc -3'
miRNA:   3'- cgCGGugCGGGCG-----UCGCCg------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5815 0.68 0.150274
Target:  5'- aCGCCGgauaccUGaCCCGCAaCGGCCGCCauuacGCCc -3'
miRNA:   3'- cGCGGU------GC-GGGCGUcGCCGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 26296 0.68 0.150274
Target:  5'- cCGCCGggcaacUGUCCGCcauGGCGGCguCACuCGCCa -3'
miRNA:   3'- cGCGGU------GCGGGCG---UCGCCG--GUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 13811 0.68 0.154295
Target:  5'- uUGCC-CaGCuuGCGGgGGaguuCCGCCGCCa -3'
miRNA:   3'- cGCGGuG-CGggCGUCgCC----GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 34880 0.68 0.154295
Target:  5'- gGCGCCACGCCgGUu---GUCGCCGgCa -3'
miRNA:   3'- -CGCGGUGCGGgCGucgcCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 21259 0.68 0.154295
Target:  5'- gGUGCC--GUCCGUGGCGGCgACgGUCu -3'
miRNA:   3'- -CGCGGugCGGGCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 3566 0.68 0.154295
Target:  5'- uGCGCgACGag-GCGGuCGGCCuuauggGCCGCCu -3'
miRNA:   3'- -CGCGgUGCgggCGUC-GCCGG------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.