miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 3' -58.5 NC_005178.1 + 13875 0.66 0.478343
Target:  5'- cCCGaAGG-CCAGCgccGCCCGgcGUgaACGGg -3'
miRNA:   3'- -GGC-UCCaGGUCG---UGGGCuaCG--UGCCg -5'
23078 3' -58.5 NC_005178.1 + 16618 0.66 0.478343
Target:  5'- gCCGcua-CCGGCACgCCGAUGaccuCGGCg -3'
miRNA:   3'- -GGCuccaGGUCGUG-GGCUACgu--GCCG- -5'
23078 3' -58.5 NC_005178.1 + 16303 0.66 0.478343
Target:  5'- aCGccGUCCGGUucgACgCCGAUGaUGCGGCc -3'
miRNA:   3'- gGCucCAGGUCG---UG-GGCUAC-GUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 32721 0.66 0.478343
Target:  5'- gCG-GGUCCAGacgcuuuugGCCUGGacguaguagGCGCGGCg -3'
miRNA:   3'- gGCuCCAGGUCg--------UGGGCUa--------CGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 18228 0.66 0.448509
Target:  5'- gCGucAGGcUUCAGCACCgaaugccuCGAcuUGCAUGGCg -3'
miRNA:   3'- gGC--UCC-AGGUCGUGG--------GCU--ACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 19676 0.66 0.447532
Target:  5'- aCCG-GGUCCaggAGCACguccuggaccucgCCGA-GgGCGGCa -3'
miRNA:   3'- -GGCuCCAGG---UCGUG-------------GGCUaCgUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 2800 0.66 0.447532
Target:  5'- gCCGAGGaaguuguccucgaUCCGGCcgACCCGAacgACGGUu -3'
miRNA:   3'- -GGCUCC-------------AGGUCG--UGGGCUacgUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 20930 0.66 0.438794
Target:  5'- gCCGAGGUCauCGGCgugCCGGUa-GCGGCa -3'
miRNA:   3'- -GGCUCCAG--GUCGug-GGCUAcgUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 17936 0.66 0.438794
Target:  5'- aCGGGGUUaacGCACCgacucUGAUGCgaguaGCGGCu -3'
miRNA:   3'- gGCUCCAGgu-CGUGG-----GCUACG-----UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 5632 0.66 0.438794
Target:  5'- gCCGA--UCCAGCGauggCCGAUGaC-CGGCa -3'
miRNA:   3'- -GGCUccAGGUCGUg---GGCUAC-GuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 18386 0.66 0.438794
Target:  5'- aCCGAcacCCuGC-CgCUGAUGCGCGGCa -3'
miRNA:   3'- -GGCUccaGGuCGuG-GGCUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 22006 0.66 0.438794
Target:  5'- gCUGGGGU-CAGCcccuugGCCgGGUGguUGGCg -3'
miRNA:   3'- -GGCUCCAgGUCG------UGGgCUACguGCCG- -5'
23078 3' -58.5 NC_005178.1 + 31520 0.67 0.429201
Target:  5'- aCGGcGGUCUGGCGa-UGcUGCGCGGCg -3'
miRNA:   3'- gGCU-CCAGGUCGUggGCuACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 3054 0.67 0.429201
Target:  5'- gCCGaAGGUCCGcCGCCCGGacaUGagcguucccgaCugGGCg -3'
miRNA:   3'- -GGC-UCCAGGUcGUGGGCU---AC-----------GugCCG- -5'
23078 3' -58.5 NC_005178.1 + 20207 0.67 0.429201
Target:  5'- gCCGGcG-CgGGCugCCGA-GCugGGCg -3'
miRNA:   3'- -GGCUcCaGgUCGugGGCUaCGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 28185 0.67 0.419732
Target:  5'- gCCucGG-CCGGCGCCCuGGcgacUGCugGCGGCa -3'
miRNA:   3'- -GGcuCCaGGUCGUGGG-CU----ACG--UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 25156 0.67 0.414112
Target:  5'- aCCGGGGUCgGGCAcgguugagccaaggcCgCCGGuaguggccUGgGCGGCa -3'
miRNA:   3'- -GGCUCCAGgUCGU---------------G-GGCU--------ACgUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 33891 0.67 0.410391
Target:  5'- aCCaGGGcGUCCugccGCGCCuggcggCGAUGCuCGGCg -3'
miRNA:   3'- -GG-CUC-CAGGu---CGUGG------GCUACGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 7033 0.67 0.407614
Target:  5'- cCCGAaGUCCGGCACCucgcccacauaccgCGA-GCGCuGCu -3'
miRNA:   3'- -GGCUcCAGGUCGUGG--------------GCUaCGUGcCG- -5'
23078 3' -58.5 NC_005178.1 + 18134 0.67 0.401181
Target:  5'- aCCGAGGcCgAGCAgCUCGGcUGCGCGcCg -3'
miRNA:   3'- -GGCUCCaGgUCGU-GGGCU-ACGUGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.