miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23087 5' -54.3 NC_005178.1 + 14674 0.8 0.100013
Target:  5'- cCGCAuCGGCGAua-GCCugGGCCACGACCg -3'
miRNA:   3'- -GCGU-GCCGCUucaUGG--UCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 16555 0.7 0.437142
Target:  5'- cCGCccACGGCGAacccGGUAgCGuucGCCACGACg -3'
miRNA:   3'- -GCG--UGCCGCU----UCAUgGU---CGGUGUUGg -5'
23087 5' -54.3 NC_005178.1 + 21846 0.69 0.457353
Target:  5'- uGCGCGGCGGcucgauGGU-CCAGUCcaGGCCg -3'
miRNA:   3'- gCGUGCCGCU------UCAuGGUCGGugUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8658 0.66 0.689099
Target:  5'- uCGUA-GGCcugc--CCAGCCGCGACCa -3'
miRNA:   3'- -GCGUgCCGcuucauGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 31792 0.75 0.227209
Target:  5'- uGCugGGCGAcacggucGUGCCcgaGGCCGCcACCg -3'
miRNA:   3'- gCGugCCGCUu------CAUGG---UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 16594 0.74 0.239779
Target:  5'- gCGC-CGGCGAAG-ACCuggacguuGGCCGCuACCg -3'
miRNA:   3'- -GCGuGCCGCUUCaUGG--------UCGGUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 20502 0.74 0.252925
Target:  5'- cCGCAUGGCGAAGaugGCCcGCagauCGGCCu -3'
miRNA:   3'- -GCGUGCCGCUUCa--UGGuCGgu--GUUGG- -5'
23087 5' -54.3 NC_005178.1 + 11683 0.73 0.286146
Target:  5'- cCGCAuggccUGGCGGuacugaccugccgaAaUGCCGGCCACGGCCa -3'
miRNA:   3'- -GCGU-----GCCGCU--------------UcAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 25781 0.72 0.335932
Target:  5'- gGCcuGCGGCGGA--ACCcccauggcucgGGCCACGGCCg -3'
miRNA:   3'- gCG--UGCCGCUUcaUGG-----------UCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 19949 0.7 0.407814
Target:  5'- -cCACGGCGAc--GCCAGCgGCcGCCg -3'
miRNA:   3'- gcGUGCCGCUucaUGGUCGgUGuUGG- -5'
23087 5' -54.3 NC_005178.1 + 19471 0.71 0.379748
Target:  5'- gCGCuGCGGC-AGGUucGCCAGCUgcucgcgaGCGACCg -3'
miRNA:   3'- -GCG-UGCCGcUUCA--UGGUCGG--------UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 9092 0.72 0.335932
Target:  5'- uGCAUGGCGGAugccgACCGGaUUACGACCu -3'
miRNA:   3'- gCGUGCCGCUUca---UGGUC-GGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 11185 0.77 0.158531
Target:  5'- gGuCGCGGUGAuuuccgacAGUACC-GCCACGGCCu -3'
miRNA:   3'- gC-GUGCCGCU--------UCAUGGuCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 19166 0.71 0.379748
Target:  5'- gCGCaucaGCGGCaGGGUGUCGGUUACAGCCg -3'
miRNA:   3'- -GCG----UGCCGcUUCAUGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 27894 0.76 0.187546
Target:  5'- gGCuCGGCGAAGccACCGGCCGCGcagAUCa -3'
miRNA:   3'- gCGuGCCGCUUCa-UGGUCGGUGU---UGG- -5'
23087 5' -54.3 NC_005178.1 + 10410 0.73 0.303618
Target:  5'- aGCgGCGGCGAuauuuuCCGGCCGCAGgCg -3'
miRNA:   3'- gCG-UGCCGCUucau--GGUCGGUGUUgG- -5'
23087 5' -54.3 NC_005178.1 + 4093 0.71 0.398315
Target:  5'- gGCACGGUGugcAGGUGCUgAGCCguaACGAUCa -3'
miRNA:   3'- gCGUGCCGC---UUCAUGG-UCGG---UGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 15366 0.69 0.457353
Target:  5'- uGC-CGGUGGAGccauagGCCAGCUGCcagaAGCCg -3'
miRNA:   3'- gCGuGCCGCUUCa-----UGGUCGGUG----UUGG- -5'
23087 5' -54.3 NC_005178.1 + 3956 0.75 0.203741
Target:  5'- aGCGCGaGCGc-GUcGCCGGUCGCGACCa -3'
miRNA:   3'- gCGUGC-CGCuuCA-UGGUCGGUGUUGG- -5'
23087 5' -54.3 NC_005178.1 + 8606 0.74 0.252925
Target:  5'- gCGCACGGCGAuggccGUGCCGGaCGCGGg- -3'
miRNA:   3'- -GCGUGCCGCUu----CAUGGUCgGUGUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.