miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 33144 0.66 0.668604
Target:  5'- cGGUCgGGuGCGGuucAUCGAUCcGCUcgGCCu -3'
miRNA:   3'- -CCGGaCCuCGCU---UGGCUAGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 12807 0.66 0.668604
Target:  5'- gGGCCgcgugGuGGGUGAGCUgcucuucgaaGGUCAGCUcgcggacaACCa -3'
miRNA:   3'- -CCGGa----C-CUCGCUUGG----------CUAGUCGA--------UGG- -5'
23093 3' -54.8 NC_005178.1 + 24713 0.66 0.657356
Target:  5'- aGGaCCUGGuuguccGCGAGCUGAccuucgaagagCAGCUcACCc -3'
miRNA:   3'- -CC-GGACCu-----CGCUUGGCUa----------GUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 19549 0.66 0.646082
Target:  5'- aGCCUGGAGCuGGGCacccUgGGCaGCCg -3'
miRNA:   3'- cCGGACCUCG-CUUGgcu-AgUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 32206 0.66 0.646082
Target:  5'- gGGCUcGGGGcCGcACCGGUguaCAGCU-CCa -3'
miRNA:   3'- -CCGGaCCUC-GCuUGGCUA---GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 27742 0.66 0.646082
Target:  5'- cGCCUGGAccugGCGAGCCaGUaCGGUgacgGCUc -3'
miRNA:   3'- cCGGACCU----CGCUUGGcUA-GUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 5261 0.66 0.646082
Target:  5'- -aCCUGGAGCaguuGGCCGA--GGCcGCCa -3'
miRNA:   3'- ccGGACCUCGc---UUGGCUagUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 10365 0.66 0.646082
Target:  5'- uGGCCgagcuggugGGcAGCGAcAUCGAggagCAGCU-CCa -3'
miRNA:   3'- -CCGGa--------CC-UCGCU-UGGCUa---GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 26777 0.66 0.634795
Target:  5'- cGCCUGGAGC-AACUGAcCaaggGGCagGCCu -3'
miRNA:   3'- cCGGACCUCGcUUGGCUaG----UCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 31652 0.66 0.634795
Target:  5'- -aCCcGGuGCGcACCGcgCAGCUgACCg -3'
miRNA:   3'- ccGGaCCuCGCuUGGCuaGUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 14450 0.66 0.623506
Target:  5'- cGCC-GGGGUgccgGAGCUGGUCAGg-GCCa -3'
miRNA:   3'- cCGGaCCUCG----CUUGGCUAGUCgaUGG- -5'
23093 3' -54.8 NC_005178.1 + 2612 0.66 0.623506
Target:  5'- aGGagCUGGAGauuugcCGGAUCGAUCAcGCcgGCCa -3'
miRNA:   3'- -CCg-GACCUC------GCUUGGCUAGU-CGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 17726 0.66 0.623506
Target:  5'- -cCCUGGAGaCGAccgaccggGCCGGUCGGaagauCCa -3'
miRNA:   3'- ccGGACCUC-GCU--------UGGCUAGUCgau--GG- -5'
23093 3' -54.8 NC_005178.1 + 30253 0.66 0.623506
Target:  5'- uGCgCUGGAGC-AGCCGggCGGCg--- -3'
miRNA:   3'- cCG-GACCUCGcUUGGCuaGUCGaugg -5'
23093 3' -54.8 NC_005178.1 + 33840 0.66 0.622377
Target:  5'- uGGCCUGGcgguccaugucGGCGccgauguAGCCGggCAGUU-CCu -3'
miRNA:   3'- -CCGGACC-----------UCGC-------UUGGCuaGUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 20528 0.66 0.62012
Target:  5'- cGGCCUcGGuuGGCGuugccaucagucgauCCGAUCcAGCgUGCCg -3'
miRNA:   3'- -CCGGA-CC--UCGCuu-------------GGCUAG-UCG-AUGG- -5'
23093 3' -54.8 NC_005178.1 + 17292 0.66 0.613352
Target:  5'- aGGCUggugGGGGCGucagauagugguugcGCCGGaCGGCgggGCCg -3'
miRNA:   3'- -CCGGa---CCUCGCu--------------UGGCUaGUCGa--UGG- -5'
23093 3' -54.8 NC_005178.1 + 20659 0.66 0.612225
Target:  5'- cGGCCaGG-GC--GCCGAgCAGCUcgGCCu -3'
miRNA:   3'- -CCGGaCCuCGcuUGGCUaGUCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 5876 0.66 0.612225
Target:  5'- aGCCgGGucAGCGuaggcuguUCGGUCAGCUGCg -3'
miRNA:   3'- cCGGaCC--UCGCuu------GGCUAGUCGAUGg -5'
23093 3' -54.8 NC_005178.1 + 21977 0.67 0.600962
Target:  5'- cGGCCUcgaucaGGAuGUGAGCCagcuuggcuggGGUCAGCcccuugGCCg -3'
miRNA:   3'- -CCGGA------CCU-CGCUUGG-----------CUAGUCGa-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.