Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23093 | 3' | -54.8 | NC_005178.1 | + | 33144 | 0.66 | 0.668604 |
Target: 5'- cGGUCgGGuGCGGuucAUCGAUCcGCUcgGCCu -3' miRNA: 3'- -CCGGaCCuCGCU---UGGCUAGuCGA--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 12807 | 0.66 | 0.668604 |
Target: 5'- gGGCCgcgugGuGGGUGAGCUgcucuucgaaGGUCAGCUcgcggacaACCa -3' miRNA: 3'- -CCGGa----C-CUCGCUUGG----------CUAGUCGA--------UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 24713 | 0.66 | 0.657356 |
Target: 5'- aGGaCCUGGuuguccGCGAGCUGAccuucgaagagCAGCUcACCc -3' miRNA: 3'- -CC-GGACCu-----CGCUUGGCUa----------GUCGA-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 19549 | 0.66 | 0.646082 |
Target: 5'- aGCCUGGAGCuGGGCacccUgGGCaGCCg -3' miRNA: 3'- cCGGACCUCG-CUUGgcu-AgUCGaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 32206 | 0.66 | 0.646082 |
Target: 5'- gGGCUcGGGGcCGcACCGGUguaCAGCU-CCa -3' miRNA: 3'- -CCGGaCCUC-GCuUGGCUA---GUCGAuGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 27742 | 0.66 | 0.646082 |
Target: 5'- cGCCUGGAccugGCGAGCCaGUaCGGUgacgGCUc -3' miRNA: 3'- cCGGACCU----CGCUUGGcUA-GUCGa---UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 5261 | 0.66 | 0.646082 |
Target: 5'- -aCCUGGAGCaguuGGCCGA--GGCcGCCa -3' miRNA: 3'- ccGGACCUCGc---UUGGCUagUCGaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 10365 | 0.66 | 0.646082 |
Target: 5'- uGGCCgagcuggugGGcAGCGAcAUCGAggagCAGCU-CCa -3' miRNA: 3'- -CCGGa--------CC-UCGCU-UGGCUa---GUCGAuGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 26777 | 0.66 | 0.634795 |
Target: 5'- cGCCUGGAGC-AACUGAcCaaggGGCagGCCu -3' miRNA: 3'- cCGGACCUCGcUUGGCUaG----UCGa-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 31652 | 0.66 | 0.634795 |
Target: 5'- -aCCcGGuGCGcACCGcgCAGCUgACCg -3' miRNA: 3'- ccGGaCCuCGCuUGGCuaGUCGA-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 14450 | 0.66 | 0.623506 |
Target: 5'- cGCC-GGGGUgccgGAGCUGGUCAGg-GCCa -3' miRNA: 3'- cCGGaCCUCG----CUUGGCUAGUCgaUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 2612 | 0.66 | 0.623506 |
Target: 5'- aGGagCUGGAGauuugcCGGAUCGAUCAcGCcgGCCa -3' miRNA: 3'- -CCg-GACCUC------GCUUGGCUAGU-CGa-UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 17726 | 0.66 | 0.623506 |
Target: 5'- -cCCUGGAGaCGAccgaccggGCCGGUCGGaagauCCa -3' miRNA: 3'- ccGGACCUC-GCU--------UGGCUAGUCgau--GG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 30253 | 0.66 | 0.623506 |
Target: 5'- uGCgCUGGAGC-AGCCGggCGGCg--- -3' miRNA: 3'- cCG-GACCUCGcUUGGCuaGUCGaugg -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 33840 | 0.66 | 0.622377 |
Target: 5'- uGGCCUGGcgguccaugucGGCGccgauguAGCCGggCAGUU-CCu -3' miRNA: 3'- -CCGGACC-----------UCGC-------UUGGCuaGUCGAuGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 20528 | 0.66 | 0.62012 |
Target: 5'- cGGCCUcGGuuGGCGuugccaucagucgauCCGAUCcAGCgUGCCg -3' miRNA: 3'- -CCGGA-CC--UCGCuu-------------GGCUAG-UCG-AUGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 17292 | 0.66 | 0.613352 |
Target: 5'- aGGCUggugGGGGCGucagauagugguugcGCCGGaCGGCgggGCCg -3' miRNA: 3'- -CCGGa---CCUCGCu--------------UGGCUaGUCGa--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 20659 | 0.66 | 0.612225 |
Target: 5'- cGGCCaGG-GC--GCCGAgCAGCUcgGCCu -3' miRNA: 3'- -CCGGaCCuCGcuUGGCUaGUCGA--UGG- -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 5876 | 0.66 | 0.612225 |
Target: 5'- aGCCgGGucAGCGuaggcuguUCGGUCAGCUGCg -3' miRNA: 3'- cCGGaCC--UCGCuu------GGCUAGUCGAUGg -5' |
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23093 | 3' | -54.8 | NC_005178.1 | + | 21977 | 0.67 | 0.600962 |
Target: 5'- cGGCCUcgaucaGGAuGUGAGCCagcuuggcuggGGUCAGCcccuugGCCg -3' miRNA: 3'- -CCGGA------CCU-CGCUUGG-----------CUAGUCGa-----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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