miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 11208 0.66 0.510354
Target:  5'- cCGCc--ACGGCcucauacugagugCCGUucGCCCUGGCg -3'
miRNA:   3'- cGCGuauUGCCGua-----------GGCG--CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 28532 0.66 0.506126
Target:  5'- gGCGCuacAUGACugGGCGggggccguccgCCGCGCCaccgggGGCg -3'
miRNA:   3'- -CGCG---UAUUG--CCGUa----------GGCGCGGga----CCG- -5'
23102 3' -57.5 NC_005178.1 + 16926 0.66 0.506126
Target:  5'- cCGgAUAugGaCGaCaGCGCCCUGGCg -3'
miRNA:   3'- cGCgUAUugCcGUaGgCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 24419 0.66 0.485221
Target:  5'- uGCGCuAUAAgGGCAUCaa---CCUGGCc -3'
miRNA:   3'- -CGCG-UAUUgCCGUAGgcgcgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 19953 0.66 0.485221
Target:  5'- cGCGCAcguCGcGCAagacUCCGCccGUCCUGGa -3'
miRNA:   3'- -CGCGUauuGC-CGU----AGGCG--CGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 26904 0.66 0.485221
Target:  5'- gGCGCGgagacgcCGGCcggggcgUUGCGCCCcGGCu -3'
miRNA:   3'- -CGCGUauu----GCCGua-----GGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 22971 0.66 0.474924
Target:  5'- aGCGCGUAGCG-----UGCGUgCUGGCa -3'
miRNA:   3'- -CGCGUAUUGCcguagGCGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 17883 0.66 0.464737
Target:  5'- cGUGCuccugGAccCGGUAcgCCaGCGCgCCUGGCa -3'
miRNA:   3'- -CGCGua---UU--GCCGUa-GG-CGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 2189 0.66 0.464737
Target:  5'- aGCaGCcgGGCcuggaGCGUCa-CGCCCUGGCu -3'
miRNA:   3'- -CG-CGuaUUGc----CGUAGgcGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 32754 0.66 0.464737
Target:  5'- gGCGCG--GCGGCgAUUgGCGaUCCaGGCg -3'
miRNA:   3'- -CGCGUauUGCCG-UAGgCGC-GGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 11669 0.66 0.464737
Target:  5'- uGCGC----CGGCAacugCCGCauGgCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCGUa---GGCG--CgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 18516 0.66 0.464737
Target:  5'- gGCGCG--GCGcGCAcccgauucUCCaggucaccaaCGCCCUGGCg -3'
miRNA:   3'- -CGCGUauUGC-CGU--------AGGc---------GCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 15121 0.66 0.45868
Target:  5'- cGCGCAgcuggggcucuuccuUGAUGGCcuugagCUGCGCCUcagucagGGCg -3'
miRNA:   3'- -CGCGU---------------AUUGCCGua----GGCGCGGGa------CCG- -5'
23102 3' -57.5 NC_005178.1 + 3898 0.66 0.454665
Target:  5'- uGUGCcuucgguuUAGCGccCAUCCGCGaucuCCUGGCg -3'
miRNA:   3'- -CGCGu-------AUUGCc-GUAGGCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 7029 0.66 0.454665
Target:  5'- cCGCGU--CGaGCGU-CGUGUCCUGGCc -3'
miRNA:   3'- cGCGUAuuGC-CGUAgGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 1435 0.66 0.454665
Target:  5'- cCGCAgc-CGGC--CCGCGCuauaCCUGGUg -3'
miRNA:   3'- cGCGUauuGCCGuaGGCGCG----GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 20944 0.66 0.454665
Target:  5'- cGUGCcgGUAGCGGCAacgUCCaggucuucgccgGCGCCaucgucgUGGCg -3'
miRNA:   3'- -CGCG--UAUUGCCGU---AGG------------CGCGGg------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 33015 0.66 0.454665
Target:  5'- -----gGGCGGCGUCCG-GCUCgaugGGCa -3'
miRNA:   3'- cgcguaUUGCCGUAGGCgCGGGa---CCG- -5'
23102 3' -57.5 NC_005178.1 + 4636 0.67 0.444713
Target:  5'- -gGCAUAGcCGGCGaCCaCGCCgCUGGa -3'
miRNA:   3'- cgCGUAUU-GCCGUaGGcGCGG-GACCg -5'
23102 3' -57.5 NC_005178.1 + 18144 0.67 0.434883
Target:  5'- -aGCAgcuCGGC-UgCGCGCCgUUGGCu -3'
miRNA:   3'- cgCGUauuGCCGuAgGCGCGG-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.