miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 36532 0.66 0.402465
Target:  5'- gGACgGCCGAgCGguAgccUugCCCGCUa -3'
miRNA:   3'- aCUGgUGGCUgGCguU---GugGGGCGAg -5'
23131 5' -59.3 NC_005178.1 + 19419 0.66 0.393306
Target:  5'- aGACCAgCGACuCGCu--GCCaCGCUCc -3'
miRNA:   3'- aCUGGUgGCUG-GCGuugUGGgGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 11663 0.66 0.393306
Target:  5'- gUGAUCugCGccggcaacuGCCGCAugGCCUgGCg- -3'
miRNA:   3'- -ACUGGugGC---------UGGCGUugUGGGgCGag -5'
23131 5' -59.3 NC_005178.1 + 13866 0.66 0.393306
Target:  5'- cGACC-CCGACCcgaaggccaGCGcCGCCCgGCg- -3'
miRNA:   3'- aCUGGuGGCUGG---------CGUuGUGGGgCGag -5'
23131 5' -59.3 NC_005178.1 + 28784 0.66 0.39149
Target:  5'- aGACCGCCGcCCGCAcgcuggccaaguCGCCCacgGCa- -3'
miRNA:   3'- aCUGGUGGCuGGCGUu-----------GUGGGg--CGag -5'
23131 5' -59.3 NC_005178.1 + 30632 0.66 0.384283
Target:  5'- -cGCCACCGAUUucgGCAGCACCagCGCc- -3'
miRNA:   3'- acUGGUGGCUGG---CGUUGUGGg-GCGag -5'
23131 5' -59.3 NC_005178.1 + 4414 0.66 0.383388
Target:  5'- aUGaACCGcacCCGACCGCAGCcaccacccaagccACCaCCGCcCa -3'
miRNA:   3'- -AC-UGGU---GGCUGGCGUUG-------------UGG-GGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 33422 0.66 0.375398
Target:  5'- cGGCCcucGCCG-UCGUAgacccACACCCUGCUg -3'
miRNA:   3'- aCUGG---UGGCuGGCGU-----UGUGGGGCGAg -5'
23131 5' -59.3 NC_005178.1 + 17192 0.66 0.375398
Target:  5'- aUGugCuCCaggacauCCGCGACGCCCUGgUCg -3'
miRNA:   3'- -ACugGuGGcu-----GGCGUUGUGGGGCgAG- -5'
23131 5' -59.3 NC_005178.1 + 27670 0.66 0.375398
Target:  5'- gUGGgCAUgGGCgCGCAACAgCgCCGCUUg -3'
miRNA:   3'- -ACUgGUGgCUG-GCGUUGUgG-GGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 31465 0.66 0.366653
Target:  5'- cUGGCgGCCGGCuCGCugAACAUUCCGUg- -3'
miRNA:   3'- -ACUGgUGGCUG-GCG--UUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 1399 0.66 0.366653
Target:  5'- uUGACCugGCCaGCagGCGugGCCUCGUUCg -3'
miRNA:   3'- -ACUGG--UGGcUGg-CGUugUGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 34662 0.66 0.366653
Target:  5'- cGACCGCCGcgcCCGUAGCcugaACCCUGg-- -3'
miRNA:   3'- aCUGGUGGCu--GGCGUUG----UGGGGCgag -5'
23131 5' -59.3 NC_005178.1 + 644 0.67 0.35805
Target:  5'- gGACaCGCCauaGCCGCA--ACCCCGCc- -3'
miRNA:   3'- aCUG-GUGGc--UGGCGUugUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 18396 0.67 0.35805
Target:  5'- -uGCCGCUGAUgCGCGGCAUCgCUGCUg -3'
miRNA:   3'- acUGGUGGCUG-GCGUUGUGG-GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 26291 0.67 0.349588
Target:  5'- -aACCACCG-CCggGCAACugUCCGC-Ca -3'
miRNA:   3'- acUGGUGGCuGG--CGUUGugGGGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 20215 0.67 0.341271
Target:  5'- gGGCUGCCGAgCuggGCGACcucgGCCCCGC-Cg -3'
miRNA:   3'- aCUGGUGGCUgG---CGUUG----UGGGGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 6513 0.67 0.341271
Target:  5'- cUGGCCagacagcguaauGCCGuCUGCAucuUCCCGCUCg -3'
miRNA:   3'- -ACUGG------------UGGCuGGCGUuguGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 11820 0.67 0.341271
Target:  5'- cUGGCCGCCcugguGACCGCGAuCAUUCgGCa- -3'
miRNA:   3'- -ACUGGUGG-----CUGGCGUU-GUGGGgCGag -5'
23131 5' -59.3 NC_005178.1 + 3894 0.67 0.341271
Target:  5'- cGGCCGCCG-CCGCcacAugACCCC-Ca- -3'
miRNA:   3'- aCUGGUGGCuGGCG---UugUGGGGcGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.