miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23133 3' -58 NC_005178.1 + 26955 0.66 0.465678
Target:  5'- -gGGCGagaaggCGCagaAGGCGCGCCUGGa- -3'
miRNA:   3'- cgUCGCa-----GUGgg-UCCGCGUGGACUac -5'
23133 3' -58 NC_005178.1 + 22767 0.66 0.45556
Target:  5'- aCAGUGagcuauugCACCCAGGCcgACCUGGUc -3'
miRNA:   3'- cGUCGCa-------GUGGGUCCGcgUGGACUAc -5'
23133 3' -58 NC_005178.1 + 12135 0.66 0.45556
Target:  5'- gGCGGCGaccaUCGCCUugauccGGGC-CGCCUGcUGg -3'
miRNA:   3'- -CGUCGC----AGUGGG------UCCGcGUGGACuAC- -5'
23133 3' -58 NC_005178.1 + 24805 0.66 0.445562
Target:  5'- -gGGCGUCGCggguuuccuUCGGGUGCGCCaUGGa- -3'
miRNA:   3'- cgUCGCAGUG---------GGUCCGCGUGG-ACUac -5'
23133 3' -58 NC_005178.1 + 16395 0.66 0.445562
Target:  5'- gGCGG-GUUucaUCAGGUGCGCCUGGg- -3'
miRNA:   3'- -CGUCgCAGug-GGUCCGCGUGGACUac -5'
23133 3' -58 NC_005178.1 + 20393 0.66 0.425941
Target:  5'- cCGGCccuggaCGCCCAGGCGaccaACCUGGc- -3'
miRNA:   3'- cGUCGca----GUGGGUCCGCg---UGGACUac -5'
23133 3' -58 NC_005178.1 + 364 0.66 0.425941
Target:  5'- -uGGCGUCAaacucggccUCCAGGCGCAgCgGGUc -3'
miRNA:   3'- cgUCGCAGU---------GGGUCCGCGUgGaCUAc -5'
23133 3' -58 NC_005178.1 + 6486 0.66 0.425941
Target:  5'- gGCAGCaaaACCCAgcggcGGCGaCGCCUGGc- -3'
miRNA:   3'- -CGUCGcagUGGGU-----CCGC-GUGGACUac -5'
23133 3' -58 NC_005178.1 + 26408 0.66 0.416325
Target:  5'- gGCGGCG--GCCaGGGCGCccGCgCUGAUGu -3'
miRNA:   3'- -CGUCGCagUGGgUCCGCG--UG-GACUAC- -5'
23133 3' -58 NC_005178.1 + 6389 0.67 0.401219
Target:  5'- aGgGGCGUCugCgCucgauugucgcggcgAGGCGCGCCgcGAUGa -3'
miRNA:   3'- -CgUCGCAGugG-G---------------UCCGCGUGGa-CUAC- -5'
23133 3' -58 NC_005178.1 + 30854 0.67 0.388291
Target:  5'- aGCAGUGaggcCGCCCgguccAGGCGCucccCCUGAa- -3'
miRNA:   3'- -CGUCGCa---GUGGG-----UCCGCGu---GGACUac -5'
23133 3' -58 NC_005178.1 + 21380 0.67 0.379226
Target:  5'- aGCAGgGUUACCUucucuucgucGGGCGUGCCgggcgGGUa -3'
miRNA:   3'- -CGUCgCAGUGGG----------UCCGCGUGGa----CUAc -5'
23133 3' -58 NC_005178.1 + 33450 0.67 0.379226
Target:  5'- uGCuGGCGUCguggaugucguaGCCCAcGGC-CACCUGGUc -3'
miRNA:   3'- -CG-UCGCAG------------UGGGU-CCGcGUGGACUAc -5'
23133 3' -58 NC_005178.1 + 8169 0.67 0.361526
Target:  5'- aGCAGCuG-CGCUCguAGGgGCugCUGAUGc -3'
miRNA:   3'- -CGUCG-CaGUGGG--UCCgCGugGACUAC- -5'
23133 3' -58 NC_005178.1 + 16700 0.68 0.352894
Target:  5'- cGCAgGCaUCGCCCAacugagccGGCGC-CCUGGUc -3'
miRNA:   3'- -CGU-CGcAGUGGGU--------CCGCGuGGACUAc -5'
23133 3' -58 NC_005178.1 + 20752 0.68 0.344409
Target:  5'- aCAGCagaGCgCCGGGCGUACCUcGGUGc -3'
miRNA:   3'- cGUCGcagUG-GGUCCGCGUGGA-CUAC- -5'
23133 3' -58 NC_005178.1 + 34505 0.68 0.336071
Target:  5'- gGCGGCGgaccuucggCACCaGGGCGCcacgcucgGCCUGGUc -3'
miRNA:   3'- -CGUCGCa--------GUGGgUCCGCG--------UGGACUAc -5'
23133 3' -58 NC_005178.1 + 13170 0.68 0.327882
Target:  5'- cGCAGCa-CGCCCAGGCauuCGCCgaGGUGc -3'
miRNA:   3'- -CGUCGcaGUGGGUCCGc--GUGGa-CUAC- -5'
23133 3' -58 NC_005178.1 + 12938 0.68 0.319842
Target:  5'- cGUGGCG-CGC-CAGGUGCuggccgGCCUGGUGa -3'
miRNA:   3'- -CGUCGCaGUGgGUCCGCG------UGGACUAC- -5'
23133 3' -58 NC_005178.1 + 24534 0.68 0.31195
Target:  5'- aGCAGCuG-CACCUucacGGCGgGCUUGAUGu -3'
miRNA:   3'- -CGUCG-CaGUGGGu---CCGCgUGGACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.