miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 5' -52.6 NC_005178.1 + 1847 0.66 0.768955
Target:  5'- cGGACcauCCGCCAuguccucGGCCagcGGaUAGGACCa -3'
miRNA:   3'- aCCUGu--GGUGGU-------UCGG---CC-AUUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 4532 0.66 0.759347
Target:  5'- cGGccuGC-CCAUCGAGCCGGac--GCCGc -3'
miRNA:   3'- aCC---UGuGGUGGUUCGGCCauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15335 0.66 0.759347
Target:  5'- aUGGAguUCGCCcugguAGGCCGGcaaGGGACCa -3'
miRNA:   3'- -ACCUguGGUGG-----UUCGGCCa--UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 25657 0.66 0.759347
Target:  5'- -cGGCAgCagGCCGAGCUGGgcAAACUGc -3'
miRNA:   3'- acCUGUgG--UGGUUCGGCCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15708 0.66 0.759347
Target:  5'- cUGGACcaucgaGCCGCCGcgcaacgccucGGCCGcagagAAGGCCGa -3'
miRNA:   3'- -ACCUG------UGGUGGU-----------UCGGCca---UUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 13116 0.66 0.759347
Target:  5'- cGGcGCGCCGCCuucGGCCaGGUugauGCCc -3'
miRNA:   3'- aCC-UGUGGUGGu--UCGG-CCAuuu-UGGc -5'
23135 5' -52.6 NC_005178.1 + 28433 0.66 0.759347
Target:  5'- cGGAUGCCugCuuuuccAGCUGGcGGAugCGg -3'
miRNA:   3'- aCCUGUGGugGu-----UCGGCCaUUUugGC- -5'
23135 5' -52.6 NC_005178.1 + 8828 0.66 0.757196
Target:  5'- aUGGuCGCCGCCcuuGCCGGcccacaugucGGCCGc -3'
miRNA:   3'- -ACCuGUGGUGGuu-CGGCCauu-------UUGGC- -5'
23135 5' -52.6 NC_005178.1 + 12963 0.66 0.748537
Target:  5'- cUGGugACCcaguCCAGGCCacgaugGAAGCCa -3'
miRNA:   3'- -ACCugUGGu---GGUUCGGcca---UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 24892 0.66 0.748537
Target:  5'- aGGcCAcCCGCCAGcgcGCCGGccgccGAGCCGu -3'
miRNA:   3'- aCCuGU-GGUGGUU---CGGCCau---UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 35536 0.66 0.747448
Target:  5'- gGGACGCUggauuuuccuucaGCCAGGCCGc---GACCu -3'
miRNA:   3'- aCCUGUGG-------------UGGUUCGGCcauuUUGGc -5'
23135 5' -52.6 NC_005178.1 + 21212 0.66 0.744175
Target:  5'- cGGACGgCACCGaaacccgcuccccGGCCGGccgcaucaucggcgUcGAACCGg -3'
miRNA:   3'- aCCUGUgGUGGU-------------UCGGCC--------------AuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 2482 0.66 0.737596
Target:  5'- cGGGCACCAgUc-GCCGGUu---CCGc -3'
miRNA:   3'- aCCUGUGGUgGuuCGGCCAuuuuGGC- -5'
23135 5' -52.6 NC_005178.1 + 5150 0.66 0.737596
Target:  5'- aGGACGCCcgcaACCuggcGCCGGUcuacAGCCc -3'
miRNA:   3'- aCCUGUGG----UGGuu--CGGCCAuu--UUGGc -5'
23135 5' -52.6 NC_005178.1 + 17053 0.66 0.737596
Target:  5'- cGGGCcaucuUCGCCAugcGGCCGG--AGGCCGc -3'
miRNA:   3'- aCCUGu----GGUGGU---UCGGCCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 4979 0.66 0.737596
Target:  5'- aUGGAcCACCugucGCCGcuGGCCaGGUcGAGCUGa -3'
miRNA:   3'- -ACCU-GUGG----UGGU--UCGG-CCAuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 32923 0.66 0.737596
Target:  5'- gUGGuCGCCggcauGCCGauGGCUGGUuu-ACCGg -3'
miRNA:   3'- -ACCuGUGG-----UGGU--UCGGCCAuuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 30678 0.66 0.72654
Target:  5'- cGGACGCUcgccCCAGGCCGac-AGAUCGa -3'
miRNA:   3'- aCCUGUGGu---GGUUCGGCcauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 36017 0.66 0.72654
Target:  5'- aGGGCGacacuuacauuuUCACCgGGGCCGGggcGAACCa -3'
miRNA:   3'- aCCUGU------------GGUGG-UUCGGCCau-UUUGGc -5'
23135 5' -52.6 NC_005178.1 + 31741 0.66 0.72654
Target:  5'- aUGGAgccCAgCGCCuGGCCcgaGGUAAuGCCGg -3'
miRNA:   3'- -ACCU---GUgGUGGuUCGG---CCAUUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.