miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 1035 0.66 0.3355
Target:  5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3'
miRNA:   3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5'
23150 5' -61 NC_005178.1 + 3722 0.66 0.3355
Target:  5'- uGGaCCGCCaggccaAGCUGGCCAccuucaagcUGacGCGCCg -3'
miRNA:   3'- -CC-GGCGGg-----UUGACCGGU---------ACc-UGCGGa -5'
23150 5' -61 NC_005178.1 + 15284 0.66 0.327494
Target:  5'- cGCCGCCUGGCgGGCCAgccUGGcgguCGgCUu -3'
miRNA:   3'- cCGGCGGGUUGaCCGGU---ACCu---GCgGA- -5'
23150 5' -61 NC_005178.1 + 8833 0.66 0.327494
Target:  5'- cGCCGCCCuuGCcGGCCcacauGUcGGcCGCCa -3'
miRNA:   3'- cCGGCGGGu-UGaCCGG-----UA-CCuGCGGa -5'
23150 5' -61 NC_005178.1 + 34567 0.66 0.327494
Target:  5'- cGCaCGCUCGGCaGGCCAUccgcgcucGGGCgGCCg -3'
miRNA:   3'- cCG-GCGGGUUGaCCGGUA--------CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 6510 0.66 0.327494
Target:  5'- cGCCGCCaccgugcgcaugCggUUGGCCAagGGaAUGCCUc -3'
miRNA:   3'- cCGGCGG------------GuuGACCGGUa-CC-UGCGGA- -5'
23150 5' -61 NC_005178.1 + 11758 0.66 0.327494
Target:  5'- cGGCCgugGCCCGA---GCCAUGGGgguucCGCCg -3'
miRNA:   3'- -CCGG---CGGGUUgacCGGUACCU-----GCGGa -5'
23150 5' -61 NC_005178.1 + 33429 0.66 0.326701
Target:  5'- cGCCGucguagacccacaCCCuGCUGGCguCGUGGAUGUCg -3'
miRNA:   3'- cCGGC-------------GGGuUGACCG--GUACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 22597 0.66 0.31963
Target:  5'- uGGCgGCCuCGACcacGuCCA-GGACGCCUg -3'
miRNA:   3'- -CCGgCGG-GUUGac-C-GGUaCCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 20821 0.66 0.31963
Target:  5'- gGGCCaGCgCAGCgaugcgaGGaCCA-GGGCGCCg -3'
miRNA:   3'- -CCGG-CGgGUUGa------CC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 15934 0.66 0.31963
Target:  5'- aGCCGCCgagUAACcGGCCAUcuuCGCCUg -3'
miRNA:   3'- cCGGCGG---GUUGaCCGGUAccuGCGGA- -5'
23150 5' -61 NC_005178.1 + 17658 0.66 0.31963
Target:  5'- cGCCaGCCCGGCacauCCAUaGGGCGCCc -3'
miRNA:   3'- cCGG-CGGGUUGacc-GGUA-CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 20635 0.66 0.31963
Target:  5'- uGUCGUCCAuauccgggaauGCcucGGCCA-GGGCGCCg -3'
miRNA:   3'- cCGGCGGGU-----------UGa--CCGGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 11715 0.66 0.31963
Target:  5'- uGCCGgCCAc--GGCCAUGG-CGUCa -3'
miRNA:   3'- cCGGCgGGUugaCCGGUACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 27455 0.66 0.31963
Target:  5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3'
miRNA:   3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 17144 0.66 0.314981
Target:  5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3'
miRNA:   3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 2760 0.66 0.311909
Target:  5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3'
miRNA:   3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.