miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 27379 0.66 0.33813
Target:  5'- --aCCugGCCAUGGCGGCUCcugucgaugauaAGCGCcugcAUCa -3'
miRNA:   3'- caaGG--UGGUGCCGCCGGG------------UCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 11092 0.66 0.33
Target:  5'- -aUCCACCuCGGcCGGC--AGCGCcgCg -3'
miRNA:   3'- caAGGUGGuGCC-GCCGggUCGCGuaG- -5'
23153 3' -60.5 NC_005178.1 + 30501 0.66 0.322015
Target:  5'- ---gCACuCAauGCGGCUCAGCGCGg- -3'
miRNA:   3'- caagGUG-GUgcCGCCGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 2447 0.66 0.322015
Target:  5'- --gCCGCCAgCGGCaGCUCGGCgGCGa- -3'
miRNA:   3'- caaGGUGGU-GCCGcCGGGUCG-CGUag -5'
23153 3' -60.5 NC_005178.1 + 13888 0.66 0.322015
Target:  5'- --gCCGCC-CGGCgugaacGGgCCAGCGCGg- -3'
miRNA:   3'- caaGGUGGuGCCG------CCgGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 14014 0.66 0.317294
Target:  5'- --aCCACC-CGGaCGGCCagcacgaagccauugCGGCGCcgCg -3'
miRNA:   3'- caaGGUGGuGCC-GCCGG---------------GUCGCGuaG- -5'
23153 3' -60.5 NC_005178.1 + 27882 0.66 0.314176
Target:  5'- --aCCGCCuCGGcCGGCUCGGCGa--- -3'
miRNA:   3'- caaGGUGGuGCC-GCCGGGUCGCguag -5'
23153 3' -60.5 NC_005178.1 + 10081 0.66 0.306481
Target:  5'- --gCCgACCAUa-UGGCCCGGCGCAUg -3'
miRNA:   3'- caaGG-UGGUGccGCCGGGUCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 31141 0.66 0.304202
Target:  5'- --gUCAUCGCGGCGcGCCUcgccgcgacaaucgAGCGCAg- -3'
miRNA:   3'- caaGGUGGUGCCGC-CGGG--------------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 1119 0.66 0.303445
Target:  5'- cUUCCACCGCGGCaauaGCCCgccaacuggguguuAGCuccagggcaguucGCGUCg -3'
miRNA:   3'- cAAGGUGGUGCCGc---CGGG--------------UCG-------------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 11393 0.67 0.291528
Target:  5'- --cCCGCCugGuggcugaucgguGCGGCCCuGCGCc-- -3'
miRNA:   3'- caaGGUGGugC------------CGCCGGGuCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 28987 0.67 0.291528
Target:  5'- --cCCugGCCugGGCGGCaCCGauaGCAUCu -3'
miRNA:   3'- caaGG--UGGugCCGCCG-GGUcg-CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 9681 0.67 0.290795
Target:  5'- aGUUgC-CCugGGCGGCCUggaggucGGCGUAg- -3'
miRNA:   3'- -CAAgGuGGugCCGCCGGG-------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 21873 0.67 0.284268
Target:  5'- -cUCCcCCAacgugcuccUGGuCGGCCCGGCGCu-- -3'
miRNA:   3'- caAGGuGGU---------GCC-GCCGGGUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 10790 0.67 0.277152
Target:  5'- --gCCGCCAuccUGGcCGaGCCCAGCcgcgaGCGUCg -3'
miRNA:   3'- caaGGUGGU---GCC-GC-CGGGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 20651 0.67 0.277152
Target:  5'- aUUCCGuCCAUGGa-GCCCugGGCGCGUg -3'
miRNA:   3'- cAAGGU-GGUGCCgcCGGG--UCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 11780 0.67 0.277152
Target:  5'- gGUUCCGCCGCaGGcCGGCCU-GCaCAUg -3'
miRNA:   3'- -CAAGGUGGUG-CC-GCCGGGuCGcGUAg -5'
23153 3' -60.5 NC_005178.1 + 24755 0.67 0.270178
Target:  5'- --cCCACCAC-GCGGCCCucaaGGC-CAUUg -3'
miRNA:   3'- caaGGUGGUGcCGCCGGG----UCGcGUAG- -5'
23153 3' -60.5 NC_005178.1 + 5682 0.67 0.270178
Target:  5'- --aCCACCGaGGCGGUCUGGCGgaCGUUg -3'
miRNA:   3'- caaGGUGGUgCCGCCGGGUCGC--GUAG- -5'
23153 3' -60.5 NC_005178.1 + 27625 0.67 0.266062
Target:  5'- aGUUCCACCAguaccuggucaaucUGGCgcGGCCCuaaguccuuggccgAGCGCAc- -3'
miRNA:   3'- -CAAGGUGGU--------------GCCG--CCGGG--------------UCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.