miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 5' -63.7 NC_005178.1 + 33186 0.66 0.285071
Target:  5'- -gGGUCGCGGCgCUgcgCGACCggaguugcucgggggUGaucgugccgaGGCCGGg -3'
miRNA:   3'- cgCCAGCGCCG-GA---GCUGG---------------AC----------CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 34521 0.66 0.275581
Target:  5'- cGCGGUCGCuGCgUCG-Ca-GGGgCGGc -3'
miRNA:   3'- -CGCCAGCGcCGgAGCuGgaCCCgGCC- -5'
23159 5' -63.7 NC_005178.1 + 35580 0.66 0.274913
Target:  5'- aGCGGUuccCGC-GCCacgucggaaagauUCGGCUcacGGGCCGGa -3'
miRNA:   3'- -CGCCA---GCGcCGG-------------AGCUGGa--CCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 25169 0.66 0.268958
Target:  5'- aCGGUUGagccaaGGCCgccgguagUGGCCUGGGCgGc -3'
miRNA:   3'- cGCCAGCg-----CCGGa-------GCUGGACCCGgCc -5'
23159 5' -63.7 NC_005178.1 + 17308 0.66 0.268958
Target:  5'- -aGGUCGCGGCCgcUCGGCgUGcgagaGGCUc- -3'
miRNA:   3'- cgCCAGCGCCGG--AGCUGgAC-----CCGGcc -5'
23159 5' -63.7 NC_005178.1 + 11146 0.66 0.262464
Target:  5'- cGCGGgCGCccuGGCCgcCGcCCUGGGCUu- -3'
miRNA:   3'- -CGCCaGCG---CCGGa-GCuGGACCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 31663 0.66 0.262464
Target:  5'- gGCGG-CGCGucucgcGCUggacgaugggCGGCCgaGGGCCGGu -3'
miRNA:   3'- -CGCCaGCGC------CGGa---------GCUGGa-CCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 17313 0.66 0.256098
Target:  5'- aGUGGUUGC-GCCggaCGGCg-GGGCCGa -3'
miRNA:   3'- -CGCCAGCGcCGGa--GCUGgaCCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 14103 0.66 0.256098
Target:  5'- cCGGgCGCccuGGCCgUCGcCCUGGGCguCGGc -3'
miRNA:   3'- cGCCaGCG---CCGG-AGCuGGACCCG--GCC- -5'
23159 5' -63.7 NC_005178.1 + 28703 0.66 0.256098
Target:  5'- cGCGGUCgGUGGCgUCGgggcucacACCcGGcacgcGCCGGg -3'
miRNA:   3'- -CGCCAG-CGCCGgAGC--------UGGaCC-----CGGCC- -5'
23159 5' -63.7 NC_005178.1 + 15680 0.66 0.24986
Target:  5'- aGCGcaagCGCGcuguCCUCGGCCUGGaCUGGa -3'
miRNA:   3'- -CGCca--GCGCc---GGAGCUGGACCcGGCC- -5'
23159 5' -63.7 NC_005178.1 + 25315 0.67 0.243747
Target:  5'- uUGGUCGCugucGGCCcgcUUGGCCaGGcGCUGGa -3'
miRNA:   3'- cGCCAGCG----CCGG---AGCUGGaCC-CGGCC- -5'
23159 5' -63.7 NC_005178.1 + 22283 0.67 0.243747
Target:  5'- gGC-GUCGgGGCCaUCGucguggUCUGcGGCCGGg -3'
miRNA:   3'- -CGcCAGCgCCGG-AGCu-----GGAC-CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 5500 0.67 0.237759
Target:  5'- cGCGGUCGCcaguugcgagacGGUggCGACCaGGGUCaGGu -3'
miRNA:   3'- -CGCCAGCG------------CCGgaGCUGGaCCCGG-CC- -5'
23159 5' -63.7 NC_005178.1 + 16199 0.67 0.226153
Target:  5'- aGCGGUgacCGGCCUCGGCCau-GCCGc -3'
miRNA:   3'- -CGCCAgc-GCCGGAGCUGGaccCGGCc -5'
23159 5' -63.7 NC_005178.1 + 12096 0.67 0.226153
Target:  5'- aGUGGUCGCguggcgGGCCU-GGCCgaUGGGCgCGc -3'
miRNA:   3'- -CGCCAGCG------CCGGAgCUGG--ACCCG-GCc -5'
23159 5' -63.7 NC_005178.1 + 31918 0.67 0.220532
Target:  5'- cCGGUCauCGGCCaucgcugaUCGGCaUGGGCCGa -3'
miRNA:   3'- cGCCAGc-GCCGG--------AGCUGgACCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 16970 0.67 0.209647
Target:  5'- cUGuUCGUGGCCgacACCUGGGgCCGGc -3'
miRNA:   3'- cGCcAGCGCCGGagcUGGACCC-GGCC- -5'
23159 5' -63.7 NC_005178.1 + 25736 0.68 0.20438
Target:  5'- cGCGGUCaccaggGCGGCCagggUGuCCUGguccaugugcaGGCCGGc -3'
miRNA:   3'- -CGCCAG------CGCCGGa---GCuGGAC-----------CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 32284 0.68 0.199228
Target:  5'- aCGGUgGCGGCCUCGGCCaacuGCUccaGGu -3'
miRNA:   3'- cGCCAgCGCCGGAGCUGGacc-CGG---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.