miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 15719 0.66 0.357866
Target:  5'- aGCCGCCGCGCaac--GCCUcGGCCg -3'
miRNA:   3'- cUGGCGGCGCGggcauCGGAcUUGGg -5'
23166 5' -60.9 NC_005178.1 + 31125 0.66 0.357866
Target:  5'- cGACgGCC-CGCCCGUGGUCaaugcacGGAUCg -3'
miRNA:   3'- -CUGgCGGcGCGGGCAUCGGa------CUUGGg -5'
23166 5' -60.9 NC_005178.1 + 20020 0.66 0.357866
Target:  5'- cGGCCaGcCCGCGCCCGcugccGGCCguuuCCUg -3'
miRNA:   3'- -CUGG-C-GGCGCGGGCa----UCGGacuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 2487 0.66 0.356188
Target:  5'- aACUGCUGCGCUCGcccucgguaacGCCcUGAucGCCCg -3'
miRNA:   3'- cUGGCGGCGCGGGCau---------CGG-ACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 31802 0.66 0.349529
Target:  5'- cACgGUCGUGCCCGaGGCCgccACCg -3'
miRNA:   3'- cUGgCGGCGCGGGCaUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 21197 0.66 0.349529
Target:  5'- aGACCGUCGcCGCCaCGgacGGCaCcGaAACCCg -3'
miRNA:   3'- -CUGGCGGC-GCGG-GCa--UCG-GaC-UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 30480 0.66 0.341331
Target:  5'- cACCGCCuCGCCCagGGCCgGGcACUCa -3'
miRNA:   3'- cUGGCGGcGCGGGcaUCGGaCU-UGGG- -5'
23166 5' -60.9 NC_005178.1 + 30991 0.66 0.333272
Target:  5'- gGAUCGCUGCGCaCGgaggcaagGGCCUGcuCCa -3'
miRNA:   3'- -CUGGCGGCGCGgGCa-------UCGGACuuGGg -5'
23166 5' -60.9 NC_005178.1 + 18094 0.66 0.333272
Target:  5'- uGCCGCaGCGCCU--GGCCc-AGCCCg -3'
miRNA:   3'- cUGGCGgCGCGGGcaUCGGacUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 2992 0.66 0.333272
Target:  5'- uGGCUGCCgaGCGUgCGcAGCCUGGAgCg -3'
miRNA:   3'- -CUGGCGG--CGCGgGCaUCGGACUUgGg -5'
23166 5' -60.9 NC_005178.1 + 19740 0.66 0.333272
Target:  5'- aACCGCCGCGCucgaCCGUcGCC---ACCa -3'
miRNA:   3'- cUGGCGGCGCG----GGCAuCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 28558 0.66 0.333272
Target:  5'- -uCCGCCGCGCCaccgggggCGUcGCCggcauuCCCg -3'
miRNA:   3'- cuGGCGGCGCGG--------GCAuCGGacuu--GGG- -5'
23166 5' -60.9 NC_005178.1 + 20863 0.66 0.325354
Target:  5'- gGGCgaUGCCuGCGCC---GGCCUGAucGCCCa -3'
miRNA:   3'- -CUG--GCGG-CGCGGgcaUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 8165 0.66 0.325354
Target:  5'- aGAUagcaGCUGCGCUCGUAGgggcugCUGAugCCc -3'
miRNA:   3'- -CUGg---CGGCGCGGGCAUCg-----GACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 12391 0.66 0.325354
Target:  5'- uGACCGCCaucaGCUCGcgGGCUUGcuggcGGCCCu -3'
miRNA:   3'- -CUGGCGGcg--CGGGCa-UCGGAC-----UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 7035 0.66 0.30994
Target:  5'- cGAgCGUCGUGUCC-UGGCCgcgcUGAGCCg -3'
miRNA:   3'- -CUgGCGGCGCGGGcAUCGG----ACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 8097 0.66 0.30994
Target:  5'- -uCUGCUGgGCCUcUGGCCUG-AUCCa -3'
miRNA:   3'- cuGGCGGCgCGGGcAUCGGACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 33901 0.67 0.303188
Target:  5'- -cCUGCCGCGCCUGgcggcgaugcucggcGGCC-GGugCCg -3'
miRNA:   3'- cuGGCGGCGCGGGCa--------------UCGGaCUugGG- -5'
23166 5' -60.9 NC_005178.1 + 6734 0.67 0.302444
Target:  5'- uGCCGCCauGCGCCg--AGCaCUGAuCCCc -3'
miRNA:   3'- cUGGCGG--CGCGGgcaUCG-GACUuGGG- -5'
23166 5' -60.9 NC_005178.1 + 1947 0.67 0.295089
Target:  5'- aACCGuCCG-GCCCGUgAGCC-GAAUCUu -3'
miRNA:   3'- cUGGC-GGCgCGGGCA-UCGGaCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.