Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23166 | 5' | -60.9 | NC_005178.1 | + | 20020 | 0.66 | 0.357866 |
Target: 5'- cGGCCaGcCCGCGCCCGcugccGGCCguuuCCUg -3' miRNA: 3'- -CUGG-C-GGCGCGGGCa----UCGGacuuGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 15719 | 0.66 | 0.357866 |
Target: 5'- aGCCGCCGCGCaac--GCCUcGGCCg -3' miRNA: 3'- cUGGCGGCGCGggcauCGGAcUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31125 | 0.66 | 0.357866 |
Target: 5'- cGACgGCC-CGCCCGUGGUCaaugcacGGAUCg -3' miRNA: 3'- -CUGgCGGcGCGGGCAUCGGa------CUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 2487 | 0.66 | 0.356188 |
Target: 5'- aACUGCUGCGCUCGcccucgguaacGCCcUGAucGCCCg -3' miRNA: 3'- cUGGCGGCGCGGGCau---------CGG-ACU--UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31802 | 0.66 | 0.349529 |
Target: 5'- cACgGUCGUGCCCGaGGCCgccACCg -3' miRNA: 3'- cUGgCGGCGCGGGCaUCGGacuUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 21197 | 0.66 | 0.349529 |
Target: 5'- aGACCGUCGcCGCCaCGgacGGCaCcGaAACCCg -3' miRNA: 3'- -CUGGCGGC-GCGG-GCa--UCG-GaC-UUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 30480 | 0.66 | 0.341331 |
Target: 5'- cACCGCCuCGCCCagGGCCgGGcACUCa -3' miRNA: 3'- cUGGCGGcGCGGGcaUCGGaCU-UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28558 | 0.66 | 0.333272 |
Target: 5'- -uCCGCCGCGCCaccgggggCGUcGCCggcauuCCCg -3' miRNA: 3'- cuGGCGGCGCGG--------GCAuCGGacuu--GGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 30991 | 0.66 | 0.333272 |
Target: 5'- gGAUCGCUGCGCaCGgaggcaagGGCCUGcuCCa -3' miRNA: 3'- -CUGGCGGCGCGgGCa-------UCGGACuuGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 19740 | 0.66 | 0.333272 |
Target: 5'- aACCGCCGCGCucgaCCGUcGCC---ACCa -3' miRNA: 3'- cUGGCGGCGCG----GGCAuCGGacuUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 2992 | 0.66 | 0.333272 |
Target: 5'- uGGCUGCCgaGCGUgCGcAGCCUGGAgCg -3' miRNA: 3'- -CUGGCGG--CGCGgGCaUCGGACUUgGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 18094 | 0.66 | 0.333272 |
Target: 5'- uGCCGCaGCGCCU--GGCCc-AGCCCg -3' miRNA: 3'- cUGGCGgCGCGGGcaUCGGacUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 8165 | 0.66 | 0.325354 |
Target: 5'- aGAUagcaGCUGCGCUCGUAGgggcugCUGAugCCc -3' miRNA: 3'- -CUGg---CGGCGCGGGCAUCg-----GACUugGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 20863 | 0.66 | 0.325354 |
Target: 5'- gGGCgaUGCCuGCGCC---GGCCUGAucGCCCa -3' miRNA: 3'- -CUG--GCGG-CGCGGgcaUCGGACU--UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 12391 | 0.66 | 0.325354 |
Target: 5'- uGACCGCCaucaGCUCGcgGGCUUGcuggcGGCCCu -3' miRNA: 3'- -CUGGCGGcg--CGGGCa-UCGGAC-----UUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 7035 | 0.66 | 0.30994 |
Target: 5'- cGAgCGUCGUGUCC-UGGCCgcgcUGAGCCg -3' miRNA: 3'- -CUgGCGGCGCGGGcAUCGG----ACUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 8097 | 0.66 | 0.30994 |
Target: 5'- -uCUGCUGgGCCUcUGGCCUG-AUCCa -3' miRNA: 3'- cuGGCGGCgCGGGcAUCGGACuUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 33901 | 0.67 | 0.303188 |
Target: 5'- -cCUGCCGCGCCUGgcggcgaugcucggcGGCC-GGugCCg -3' miRNA: 3'- cuGGCGGCGCGGGCa--------------UCGGaCUugGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 6734 | 0.67 | 0.302444 |
Target: 5'- uGCCGCCauGCGCCg--AGCaCUGAuCCCc -3' miRNA: 3'- cUGGCGG--CGCGGgcaUCG-GACUuGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 1947 | 0.67 | 0.295089 |
Target: 5'- aACCGuCCG-GCCCGUgAGCC-GAAUCUu -3' miRNA: 3'- cUGGC-GGCgCGGGCA-UCGGaCUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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