miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 5' -60.7 NC_005178.1 + 27959 0.66 0.367957
Target:  5'- -aUGuuGaaGCGGCGACCGcccagcgcaGCGcGGCGCa -3'
miRNA:   3'- agACggC--CGCUGUUGGC---------CGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 10127 0.66 0.35946
Target:  5'- --gGCUGGaCGACAgccagcucuACCGGCugaugcaGGCGCu -3'
miRNA:   3'- agaCGGCC-GCUGU---------UGGCCGca-----CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 13652 0.66 0.35946
Target:  5'- --cGCCGuuGACGAuaGGCGcGGCGUc -3'
miRNA:   3'- agaCGGCcgCUGUUggCCGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 27887 0.66 0.35946
Target:  5'- cUCgGCCGGCucGGCGaagccACCGGCc--GCGCa -3'
miRNA:   3'- -AGaCGGCCG--CUGU-----UGGCCGcacCGCG- -5'
23167 5' -60.7 NC_005178.1 + 13890 0.66 0.35946
Target:  5'- --cGcCCGGCGugAACgGGCca-GCGCg -3'
miRNA:   3'- agaC-GGCCGCugUUGgCCGcacCGCG- -5'
23167 5' -60.7 NC_005178.1 + 2449 0.66 0.351102
Target:  5'- --cGCCaGCGGCAGCuCGGC--GGCGa -3'
miRNA:   3'- agaCGGcCGCUGUUG-GCCGcaCCGCg -5'
23167 5' -60.7 NC_005178.1 + 9289 0.66 0.351102
Target:  5'- aCUGacaccauUGGCGGCGGCCaGCGaGGCGg -3'
miRNA:   3'- aGACg------GCCGCUGUUGGcCGCaCCGCg -5'
23167 5' -60.7 NC_005178.1 + 11388 0.66 0.351102
Target:  5'- gUCUGCCcgccuGGUGGCuGAUCGGUGcGGCccuGCg -3'
miRNA:   3'- -AGACGG-----CCGCUG-UUGGCCGCaCCG---CG- -5'
23167 5' -60.7 NC_005178.1 + 14074 0.66 0.351102
Target:  5'- --aGCCGGCcgaGCAgcggGCCGGCuucgcgccgGGCGCc -3'
miRNA:   3'- agaCGGCCGc--UGU----UGGCCGca-------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 32608 0.66 0.351102
Target:  5'- aUCaGCgGGCGGCcGCUGGCGgccaguuccucGGCGa -3'
miRNA:   3'- -AGaCGgCCGCUGuUGGCCGCa----------CCGCg -5'
23167 5' -60.7 NC_005178.1 + 5031 0.66 0.342883
Target:  5'- gUUGUCGGUGAUGccgcCCGGCacGGUGCg -3'
miRNA:   3'- aGACGGCCGCUGUu---GGCCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 10636 0.66 0.342883
Target:  5'- --aGCCGG-GGCGcaacgccccgGCCGGCGUcuccGCGCc -3'
miRNA:   3'- agaCGGCCgCUGU----------UGGCCGCAc---CGCG- -5'
23167 5' -60.7 NC_005178.1 + 18499 0.66 0.342883
Target:  5'- --aGCgCGaGCGGCGAaggGGCGcGGCGCg -3'
miRNA:   3'- agaCG-GC-CGCUGUUgg-CCGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 25896 0.66 0.334803
Target:  5'- gUUGCCGGCG-CAgaucACCGaCGUGGUc- -3'
miRNA:   3'- aGACGGCCGCuGU----UGGCcGCACCGcg -5'
23167 5' -60.7 NC_005178.1 + 21107 0.66 0.334803
Target:  5'- cUCaGCgUGGCGGCgAGCUGGCG-GGCa- -3'
miRNA:   3'- -AGaCG-GCCGCUG-UUGGCCGCaCCGcg -5'
23167 5' -60.7 NC_005178.1 + 7627 0.66 0.334003
Target:  5'- aUUGCCGGCGAgCugccauugauuggAACCGGCGUugaacgaccaguGGcCGUc -3'
miRNA:   3'- aGACGGCCGCU-G-------------UUGGCCGCA------------CC-GCG- -5'
23167 5' -60.7 NC_005178.1 + 30803 0.66 0.326864
Target:  5'- gUCgcgGCCu-CGACcugGGCCGGCGUcuacgcGGCGCa -3'
miRNA:   3'- -AGa--CGGccGCUG---UUGGCCGCA------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 20945 0.66 0.324509
Target:  5'- -gUGCCGGUagcGGCAacguccaggucuucGCCGGCGccaucgucgUGGCGa -3'
miRNA:   3'- agACGGCCG---CUGU--------------UGGCCGC---------ACCGCg -5'
23167 5' -60.7 NC_005178.1 + 351 0.67 0.322168
Target:  5'- -gUGCCGGUaGCGA-UGGCGUcaaacucggccuccaGGCGCa -3'
miRNA:   3'- agACGGCCGcUGUUgGCCGCA---------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 5366 0.67 0.319065
Target:  5'- -gUGUCGGCGucCAGCuCGGUGcUGGUGa -3'
miRNA:   3'- agACGGCCGCu-GUUG-GCCGC-ACCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.