Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23167 | 5' | -60.7 | NC_005178.1 | + | 27959 | 0.66 | 0.367957 |
Target: 5'- -aUGuuGaaGCGGCGACCGcccagcgcaGCGcGGCGCa -3' miRNA: 3'- agACggC--CGCUGUUGGC---------CGCaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 10127 | 0.66 | 0.35946 |
Target: 5'- --gGCUGGaCGACAgccagcucuACCGGCugaugcaGGCGCu -3' miRNA: 3'- agaCGGCC-GCUGU---------UGGCCGca-----CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 13890 | 0.66 | 0.35946 |
Target: 5'- --cGcCCGGCGugAACgGGCca-GCGCg -3' miRNA: 3'- agaC-GGCCGCugUUGgCCGcacCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 27887 | 0.66 | 0.35946 |
Target: 5'- cUCgGCCGGCucGGCGaagccACCGGCc--GCGCa -3' miRNA: 3'- -AGaCGGCCG--CUGU-----UGGCCGcacCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 13652 | 0.66 | 0.35946 |
Target: 5'- --cGCCGuuGACGAuaGGCGcGGCGUc -3' miRNA: 3'- agaCGGCcgCUGUUggCCGCaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 32608 | 0.66 | 0.351102 |
Target: 5'- aUCaGCgGGCGGCcGCUGGCGgccaguuccucGGCGa -3' miRNA: 3'- -AGaCGgCCGCUGuUGGCCGCa----------CCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 2449 | 0.66 | 0.351102 |
Target: 5'- --cGCCaGCGGCAGCuCGGC--GGCGa -3' miRNA: 3'- agaCGGcCGCUGUUG-GCCGcaCCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 9289 | 0.66 | 0.351102 |
Target: 5'- aCUGacaccauUGGCGGCGGCCaGCGaGGCGg -3' miRNA: 3'- aGACg------GCCGCUGUUGGcCGCaCCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 11388 | 0.66 | 0.351102 |
Target: 5'- gUCUGCCcgccuGGUGGCuGAUCGGUGcGGCccuGCg -3' miRNA: 3'- -AGACGG-----CCGCUG-UUGGCCGCaCCG---CG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 14074 | 0.66 | 0.351102 |
Target: 5'- --aGCCGGCcgaGCAgcggGCCGGCuucgcgccgGGCGCc -3' miRNA: 3'- agaCGGCCGc--UGU----UGGCCGca-------CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 10636 | 0.66 | 0.342883 |
Target: 5'- --aGCCGG-GGCGcaacgccccgGCCGGCGUcuccGCGCc -3' miRNA: 3'- agaCGGCCgCUGU----------UGGCCGCAc---CGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 18499 | 0.66 | 0.342883 |
Target: 5'- --aGCgCGaGCGGCGAaggGGCGcGGCGCg -3' miRNA: 3'- agaCG-GC-CGCUGUUgg-CCGCaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 5031 | 0.66 | 0.342883 |
Target: 5'- gUUGUCGGUGAUGccgcCCGGCacGGUGCg -3' miRNA: 3'- aGACGGCCGCUGUu---GGCCGcaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 21107 | 0.66 | 0.334803 |
Target: 5'- cUCaGCgUGGCGGCgAGCUGGCG-GGCa- -3' miRNA: 3'- -AGaCG-GCCGCUG-UUGGCCGCaCCGcg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 25896 | 0.66 | 0.334803 |
Target: 5'- gUUGCCGGCG-CAgaucACCGaCGUGGUc- -3' miRNA: 3'- aGACGGCCGCuGU----UGGCcGCACCGcg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 7627 | 0.66 | 0.334003 |
Target: 5'- aUUGCCGGCGAgCugccauugauuggAACCGGCGUugaacgaccaguGGcCGUc -3' miRNA: 3'- aGACGGCCGCU-G-------------UUGGCCGCA------------CC-GCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 30803 | 0.66 | 0.326864 |
Target: 5'- gUCgcgGCCu-CGACcugGGCCGGCGUcuacgcGGCGCa -3' miRNA: 3'- -AGa--CGGccGCUG---UUGGCCGCA------CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 20945 | 0.66 | 0.324509 |
Target: 5'- -gUGCCGGUagcGGCAacguccaggucuucGCCGGCGccaucgucgUGGCGa -3' miRNA: 3'- agACGGCCG---CUGU--------------UGGCCGC---------ACCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 351 | 0.67 | 0.322168 |
Target: 5'- -gUGCCGGUaGCGA-UGGCGUcaaacucggccuccaGGCGCa -3' miRNA: 3'- agACGGCCGcUGUUgGCCGCA---------------CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 5366 | 0.67 | 0.319065 |
Target: 5'- -gUGUCGGCGucCAGCuCGGUGcUGGUGa -3' miRNA: 3'- agACGGCCGCu-GUUG-GCCGC-ACCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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