miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 12761 0.66 0.431938
Target:  5'- cCGCGacgccCUGCGCCGcgccuaCGUccucgACCGGCa -3'
miRNA:   3'- -GCGCc----GACGCGGCuaug--GCA-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 31467 0.66 0.431938
Target:  5'- gGCGGCcgGCucGCUGAacauuCCGUgcgacacgGCCGGCc -3'
miRNA:   3'- gCGCCGa-CG--CGGCUau---GGCA--------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 6041 0.66 0.431938
Target:  5'- gGCGGCUGaaGCCGugaugaagACgGUGCCGa- -3'
miRNA:   3'- gCGCCGACg-CGGCua------UGgCAUGGCcg -5'
23168 5' -59.5 NC_005178.1 + 13830 0.66 0.422479
Target:  5'- gCGCGaCUGaCGUCGAUcUCGUcgcccugcgccACCGGCu -3'
miRNA:   3'- -GCGCcGAC-GCGGCUAuGGCA-----------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2971 0.66 0.422479
Target:  5'- uCGCGGCcgcccgaGCGCgGAUGgC-UGCCGaGCg -3'
miRNA:   3'- -GCGCCGa------CGCGgCUAUgGcAUGGC-CG- -5'
23168 5' -59.5 NC_005178.1 + 26356 0.66 0.419665
Target:  5'- --aGGCcGUGgCGGUACUGUcggaaaucaccgcgACCGGCa -3'
miRNA:   3'- gcgCCGaCGCgGCUAUGGCA--------------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5614 0.66 0.413145
Target:  5'- cCGCucGGCUcgGCccauGCCGAUccagcgaugGCCGaugACCGGCa -3'
miRNA:   3'- -GCG--CCGA--CG----CGGCUA---------UGGCa--UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 30597 0.66 0.413145
Target:  5'- -aCGGCUcaUGCCGAuUGCCucGCCGGCu -3'
miRNA:   3'- gcGCCGAc-GCGGCU-AUGGcaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 25914 0.66 0.407606
Target:  5'- aGCaGCUuugccaggGCGCgGAUGCCGUuaugcgcgugucgaaGCgGGCg -3'
miRNA:   3'- gCGcCGA--------CGCGgCUAUGGCA---------------UGgCCG- -5'
23168 5' -59.5 NC_005178.1 + 28516 0.66 0.40394
Target:  5'- gCGCGGCauUGCuccagGUCGAaGCCGgcaaCGGCg -3'
miRNA:   3'- -GCGCCG--ACG-----CGGCUaUGGCaug-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 9879 0.66 0.40394
Target:  5'- aGCGGCgcuguugcGCGCCcAUGCCca--CGGCa -3'
miRNA:   3'- gCGCCGa-------CGCGGcUAUGGcaugGCCG- -5'
23168 5' -59.5 NC_005178.1 + 15326 0.66 0.403026
Target:  5'- uGCGGCUuugcGUGCCauGAgcUGCCcccuuaugcgccaGUGCCGGUg -3'
miRNA:   3'- gCGCCGA----CGCGG--CU--AUGG-------------CAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18191 0.66 0.394865
Target:  5'- -uCGGCUGCG-CGGUGgCGUcuauggGCCGGg -3'
miRNA:   3'- gcGCCGACGCgGCUAUgGCA------UGGCCg -5'
23168 5' -59.5 NC_005178.1 + 26758 0.66 0.393965
Target:  5'- uCGCGGCUGgGCUcggccagGAUGgCGg--CGGCg -3'
miRNA:   3'- -GCGCCGACgCGG-------CUAUgGCaugGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18556 0.66 0.385923
Target:  5'- gGCGcGCUcgaucacaacccGCGCCGA--CCGUgACCaGGCg -3'
miRNA:   3'- gCGC-CGA------------CGCGGCUauGGCA-UGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 35069 0.66 0.385923
Target:  5'- uCGCGGaaccgGCGaCUGGUGCCcgACCGGa -3'
miRNA:   3'- -GCGCCga---CGC-GGCUAUGGcaUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 30799 0.67 0.377116
Target:  5'- aGCGGUcGCgGCCucgACCuggGCCGGCg -3'
miRNA:   3'- gCGCCGaCG-CGGcuaUGGca-UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 16058 0.67 0.377116
Target:  5'- cCGCGuGCUG-GCCug-GCCGUACCuGUu -3'
miRNA:   3'- -GCGC-CGACgCGGcuaUGGCAUGGcCG- -5'
23168 5' -59.5 NC_005178.1 + 33383 0.67 0.368445
Target:  5'- uCGCGGCUGuUGCCGuucagcucUGCgGUGCagaggaagCGGCc -3'
miRNA:   3'- -GCGCCGAC-GCGGCu-------AUGgCAUG--------GCCG- -5'
23168 5' -59.5 NC_005178.1 + 21349 0.67 0.368445
Target:  5'- uGCGGCaUG-GCCGAgGCCGgucACCGcucGCa -3'
miRNA:   3'- gCGCCG-ACgCGGCUaUGGCa--UGGC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.