miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 35861 0.66 0.502281
Target:  5'- uCCGccGCCGcGUCcaccgcaGCCGCCGCCGa -3'
miRNA:   3'- cGGCucCGGC-UAGag-----CGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 4895 0.66 0.502281
Target:  5'- aCCGAGGgUGAUCggaugaGCUGCUuuGCCGUa -3'
miRNA:   3'- cGGCUCCgGCUAGag----CGGUGG--CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 44512 0.66 0.502281
Target:  5'- uGCCcuGGCCacccaCGCCGCCGCCcgGCa -3'
miRNA:   3'- -CGGcuCCGGcuagaGCGGUGGCGG--CG- -5'
23220 5' -61.6 NC_005259.1 + 15837 0.66 0.502281
Target:  5'- aGCuCGAuguacGGCuCGGgcaUCGCCAagcUCGCCGCu -3'
miRNA:   3'- -CG-GCU-----CCG-GCUag-AGCGGU---GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 56770 0.66 0.502281
Target:  5'- aUCGGGGaCCG--CUUGaCACCGCCGUu -3'
miRNA:   3'- cGGCUCC-GGCuaGAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 14371 0.66 0.502281
Target:  5'- uGUCuccGCUGAUCUCGUCACCGagcuCGCc -3'
miRNA:   3'- -CGGcucCGGCUAGAGCGGUGGCg---GCG- -5'
23220 5' -61.6 NC_005259.1 + 67108 0.66 0.50131
Target:  5'- uCCGAGGUguacugcccgcugCGGUCgugCGUgagCACCGCUGUg -3'
miRNA:   3'- cGGCUCCG-------------GCUAGa--GCG---GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 17846 0.66 0.499371
Target:  5'- gGCCGAGGCCaccccguggucagcGAUCcuugaGCCGCuCGguuggacccCCGCa -3'
miRNA:   3'- -CGGCUCCGG--------------CUAGag---CGGUG-GC---------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 33599 0.66 0.497435
Target:  5'- aCCGAGGCgCGGUCgagcugcaaccgGCCACCGaaacuguugcgaaUCGCg -3'
miRNA:   3'- cGGCUCCG-GCUAGag----------CGGUGGC-------------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 16622 0.66 0.492611
Target:  5'- -aCG-GGCCGAggCagGCCACCuacggcgacGCCGCc -3'
miRNA:   3'- cgGCuCCGGCUa-GagCGGUGG---------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 33133 0.66 0.492611
Target:  5'- aGCCGccGCgcgUGAUCUUGCCguagACCGCCu- -3'
miRNA:   3'- -CGGCucCG---GCUAGAGCGG----UGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 17772 0.66 0.492611
Target:  5'- cGCCG-GGCCGAg--CGC-ACCGagcgugcgcaCCGCg -3'
miRNA:   3'- -CGGCuCCGGCUagaGCGgUGGC----------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 68745 0.66 0.492611
Target:  5'- uGCCGAGcucgaccccGgCGAcCUCGCCAUCGgUGUa -3'
miRNA:   3'- -CGGCUC---------CgGCUaGAGCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 14668 0.66 0.491649
Target:  5'- cCCGAcucgGGCCGcGUgcacucgauucugCUCGaCCcCCGCCGCg -3'
miRNA:   3'- cGGCU----CCGGC-UA-------------GAGC-GGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 20701 0.66 0.483027
Target:  5'- cGCuCGGuGGUCGAaggUUUCaCC-CCGCCGCg -3'
miRNA:   3'- -CG-GCU-CCGGCU---AGAGcGGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 5494 0.66 0.483027
Target:  5'- cGCCGAGcGagGAUCgagCuaCGCgCGCCGCg -3'
miRNA:   3'- -CGGCUC-CggCUAGa--GcgGUG-GCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 66020 0.66 0.477321
Target:  5'- cUCGGGGCCgcacguguugcgcgcGAgCUCGacguagaCGCCGCCGUg -3'
miRNA:   3'- cGGCUCCGG---------------CUaGAGCg------GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 38517 0.66 0.473535
Target:  5'- cGCCGuuGUagaGAUagaacucgCGCC-CCGCCGCa -3'
miRNA:   3'- -CGGCucCGg--CUAga------GCGGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26558 0.66 0.473535
Target:  5'- aCCGAGGCUGua---GCCGCCGa-GCa -3'
miRNA:   3'- cGGCUCCGGCuagagCGGUGGCggCG- -5'
23220 5' -61.6 NC_005259.1 + 2944 0.66 0.473535
Target:  5'- uCCaAGGCgcgCGAgaccCUgGCCACCGCgCGCg -3'
miRNA:   3'- cGGcUCCG---GCUa---GAgCGGUGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.