miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 45401 0.66 0.794817
Target:  5'- uCGCCGcCGagCGCGcUGaUGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCggGUGCuACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 47662 0.66 0.794817
Target:  5'- ---aCGUGCUguUGAUGgccuUGGCCACCu -3'
miRNA:   3'- cgugGCGCGGguGCUACa---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45177 0.66 0.794817
Target:  5'- uGUugCGCGCCgaggucagCGCGGUGaUGACgGgCg -3'
miRNA:   3'- -CGugGCGCGG--------GUGCUACaACUGgUgG- -5'
23230 5' -55.7 NC_005259.1 + 8384 0.66 0.794817
Target:  5'- gGCAUCGgcgagaGCCUcgGCGAgccgGGCCACCu -3'
miRNA:   3'- -CGUGGCg-----CGGG--UGCUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52536 0.66 0.793871
Target:  5'- -gGCCGCGCCCcaagauuggauguGCGAgcccgacaugGUcGACCggACCg -3'
miRNA:   3'- cgUGGCGCGGG-------------UGCUa---------CAaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 9822 0.66 0.791972
Target:  5'- cGCACCGCcgggugcggcgcugGCCCAauCGAcaUUGACCAg- -3'
miRNA:   3'- -CGUGGCG--------------CGGGU--GCUacAACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 36138 0.66 0.789113
Target:  5'- cCGCCGgGCuguccgucgccauggCCACGGUGacGACCuuGCCg -3'
miRNA:   3'- cGUGGCgCG---------------GGUGCUACaaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 37652 0.66 0.785279
Target:  5'- cGCACCGcCGCCgC-CGccgGU--GCCGCCa -3'
miRNA:   3'- -CGUGGC-GCGG-GuGCua-CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 24135 0.66 0.779484
Target:  5'- cCGCCGcCGCCCugcucgccgaguugcGCGAUGUcuacGCCaACCa -3'
miRNA:   3'- cGUGGC-GCGGG---------------UGCUACAac--UGG-UGG- -5'
23230 5' -55.7 NC_005259.1 + 42141 0.66 0.775591
Target:  5'- cGUACguCGCGCCCGCGuug--GugCACg -3'
miRNA:   3'- -CGUG--GCGCGGGUGCuacaaCugGUGg -5'
23230 5' -55.7 NC_005259.1 + 34621 0.66 0.775591
Target:  5'- cGCGauGUGCCagACGAUGggcgcgGACCACa -3'
miRNA:   3'- -CGUggCGCGGg-UGCUACaa----CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 60132 0.66 0.775591
Target:  5'- -gGCCuCGUCCuGCGcgGccUUGGCCGCCg -3'
miRNA:   3'- cgUGGcGCGGG-UGCuaC--AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 27860 0.66 0.775591
Target:  5'- cGCGCCGUacgaccGCCCucuUGGg--UGugCACCa -3'
miRNA:   3'- -CGUGGCG------CGGGu--GCUacaACugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52164 0.66 0.775591
Target:  5'- aGCGCCgagGCGCUCAUGcagcagGACCGCg -3'
miRNA:   3'- -CGUGG---CGCGGGUGCuacaa-CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 22653 0.66 0.775591
Target:  5'- aCGCCGCccaccacaucGCCgACGcac-UGACCGCCg -3'
miRNA:   3'- cGUGGCG----------CGGgUGCuacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 17049 0.66 0.769709
Target:  5'- -aACCGCGaCCC-CGAggcggugcgcgcauuUGUgcgucaGGCCGCCg -3'
miRNA:   3'- cgUGGCGC-GGGuGCU---------------ACAa-----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 9711 0.66 0.769709
Target:  5'- gGCACCGUccucgggccggucgaGCUCGcCGAUGUUccggucauCCACCa -3'
miRNA:   3'- -CGUGGCG---------------CGGGU-GCUACAAcu------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 720 0.66 0.765762
Target:  5'- gGCAUCGCGagaaucacaCCgGCGGUGccuacGCCGCCg -3'
miRNA:   3'- -CGUGGCGC---------GGgUGCUACaac--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40470 0.66 0.765762
Target:  5'- cGUACUGCcgGgCCGCGcgGUUGACguuggaCACCc -3'
miRNA:   3'- -CGUGGCG--CgGGUGCuaCAACUG------GUGG- -5'
23230 5' -55.7 NC_005259.1 + 37509 0.66 0.765762
Target:  5'- aGCACgaUGCuGCCCgACGAgaagaucGUcgGGCCGCCg -3'
miRNA:   3'- -CGUG--GCG-CGGG-UGCUa------CAa-CUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.