Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 47278 | 1.1 | 0.000362 |
Target: 5'- gCGCACCGAGCAGACCGCCGUCGCCGGa -3' miRNA: 3'- -GCGUGGCUCGUCUGGCGGCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 26108 | 0.87 | 0.01819 |
Target: 5'- ---cCCGAGCAGACCGCCGcCGCCGGu -3' miRNA: 3'- gcguGGCUCGUCUGGCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7641 | 0.81 | 0.046195 |
Target: 5'- cCGuCGCCGAGUucGACCGCCGUCGUCGu -3' miRNA: 3'- -GC-GUGGCUCGu-CUGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 35520 | 0.8 | 0.05738 |
Target: 5'- cCGcCGCCGGGCAcaccGcCCGCCGUCGCCGa -3' miRNA: 3'- -GC-GUGGCUCGU----CuGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7314 | 0.8 | 0.063917 |
Target: 5'- uGC-CCGAGUucACCGCCGUCGCCGa -3' miRNA: 3'- gCGuGGCUCGucUGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 17731 | 0.79 | 0.070035 |
Target: 5'- aCGCACCGuggcuGCucgacgcgauccgugAGGCCGCCGcgCGCCGGg -3' miRNA: 3'- -GCGUGGCu----CG---------------UCUGGCGGCa-GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 16699 | 0.78 | 0.077124 |
Target: 5'- gGCACCGAGguGACCGCCGagcaggUCGCg-- -3' miRNA: 3'- gCGUGGCUCguCUGGCGGC------AGCGgcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 43031 | 0.77 | 0.100593 |
Target: 5'- uGcCGCCGAGCAGGCCGCCGagcagCGaaccgaCGGg -3' miRNA: 3'- gC-GUGGCUCGUCUGGCGGCa----GCg-----GCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 16567 | 0.76 | 0.106035 |
Target: 5'- cCGCccACCGGGCAGAUCGCCGaggacaUCGCCc- -3' miRNA: 3'- -GCG--UGGCUCGUCUGGCGGC------AGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 11006 | 0.76 | 0.117759 |
Target: 5'- gGCACCGcGcCGGACgCGCCGaggcaggaguUCGCCGGg -3' miRNA: 3'- gCGUGGCuC-GUCUG-GCGGC----------AGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 53252 | 0.75 | 0.124065 |
Target: 5'- cCGaCACCGucGCc-GCCGCUGUCGCCGGu -3' miRNA: 3'- -GC-GUGGCu-CGucUGGCGGCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 45541 | 0.75 | 0.124065 |
Target: 5'- gGCugCGAGCGGGuuGC--UCGCCGGg -3' miRNA: 3'- gCGugGCUCGUCUggCGgcAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 59124 | 0.75 | 0.136209 |
Target: 5'- gGCAUCGAGCAGAgCGUCGagcucggcagcggUGCCGGg -3' miRNA: 3'- gCGUGGCUCGUCUgGCGGCa------------GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 56293 | 0.74 | 0.148672 |
Target: 5'- gGCACC-AGCAGACCa-CGUgGCCGGa -3' miRNA: 3'- gCGUGGcUCGUCUGGcgGCAgCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 14334 | 0.74 | 0.148672 |
Target: 5'- cCGC-CCGcguGCGGGCCGCCGaCGCCa- -3' miRNA: 3'- -GCGuGGCu--CGUCUGGCGGCaGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 45630 | 0.74 | 0.160523 |
Target: 5'- cCGgGCCGGGCAGcgcgccgguGCCGCCGUgaacacCGCCGu -3' miRNA: 3'- -GCgUGGCUCGUC---------UGGCGGCA------GCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 45401 | 0.74 | 0.168463 |
Target: 5'- uCGcCGCCGAGCGcgcugauGGCCGCCGcCGCUGc -3' miRNA: 3'- -GC-GUGGCUCGU-------CUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 22674 | 0.74 | 0.16889 |
Target: 5'- aCGCACUGAccgccGCcGAuuuccCCGCCGUCGCCGu -3' miRNA: 3'- -GCGUGGCU-----CGuCU-----GGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 26067 | 0.74 | 0.16889 |
Target: 5'- cCGcCGCCGAGCAGuCCcccgagGCCGcCGCCGa -3' miRNA: 3'- -GC-GUGGCUCGUCuGG------CGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 60503 | 0.73 | 0.172781 |
Target: 5'- aCGCGCCGGuguugucGUAGugCGCCaUgGCCGGg -3' miRNA: 3'- -GCGUGGCU-------CGUCugGCGGcAgCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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