miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 56293 0.74 0.148672
Target:  5'- gGCACC-AGCAGACCa-CGUgGCCGGa -3'
miRNA:   3'- gCGUGGcUCGUCUGGcgGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 56068 0.68 0.395827
Target:  5'- gGCGucgagaccgUCGAGCAGAUCGgUGcUCGUCGGg -3'
miRNA:   3'- gCGU---------GGCUCGUCUGGCgGC-AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 55902 0.71 0.239018
Target:  5'- uCGCGCCGGGgucgcuggcCAGACCGCUGgucUGCuCGGc -3'
miRNA:   3'- -GCGUGGCUC---------GUCUGGCGGCa--GCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 55562 0.68 0.39498
Target:  5'- uGCcgaaAgCGAGCAGgaacaucACCGCCG-CGCUGGc -3'
miRNA:   3'- gCG----UgGCUCGUC-------UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 55426 0.67 0.421767
Target:  5'- aGCACCGAGCcGACgaCGCCGacgaacgCGUacaGGg -3'
miRNA:   3'- gCGUGGCUCGuCUG--GCGGCa------GCGg--CC- -5'
23233 5' -61.6 NC_005259.1 + 55132 0.7 0.269431
Target:  5'- cCGUGCCGAGCAGGCCGacaaGguaGuuGGg -3'
miRNA:   3'- -GCGUGGCUCGUCUGGCgg--Cag-CggCC- -5'
23233 5' -61.6 NC_005259.1 + 53722 0.66 0.505259
Target:  5'- cCGCGCC--GCuGAUgGUgaUGUCGCCGGg -3'
miRNA:   3'- -GCGUGGcuCGuCUGgCG--GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 53252 0.75 0.124065
Target:  5'- cCGaCACCGucGCc-GCCGCUGUCGCCGGu -3'
miRNA:   3'- -GC-GUGGCu-CGucUGGCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 52110 0.68 0.404359
Target:  5'- gGCAacCUGAGCGGcaaucuccgcACCGCCGuccggcaccUCGCCGa -3'
miRNA:   3'- gCGU--GGCUCGUC----------UGGCGGC---------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 52015 0.7 0.295949
Target:  5'- uGCA-CGAGCgucAGGCCGCCGcacugcgcgcugUCGCCGu -3'
miRNA:   3'- gCGUgGCUCG---UCUGGCGGC------------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 50436 0.68 0.362883
Target:  5'- gGCAgCGGuGCGGGCuCGggGUCGCCGGu -3'
miRNA:   3'- gCGUgGCU-CGUCUG-GCggCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 48631 0.7 0.275876
Target:  5'- uGCcucGCCGAGaCGGGCUGCCagaucGUCGCCa- -3'
miRNA:   3'- gCG---UGGCUC-GUCUGGCGG-----CAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 48523 0.68 0.4035
Target:  5'- cCGCACU--GCcGACuucucggCGCUGUCGCCGGu -3'
miRNA:   3'- -GCGUGGcuCGuCUG-------GCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 48163 0.68 0.35495
Target:  5'- uCGC-CCGAaaccGCcc-CCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGuGGCU----CGucuGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 47956 0.69 0.331891
Target:  5'- gGUGCCGAu--GGCCGCCG-CGCCGc -3'
miRNA:   3'- gCGUGGCUcguCUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 47471 0.66 0.476566
Target:  5'- aGcCACCGAGguGAUCGC-GUCaCCGa -3'
miRNA:   3'- gC-GUGGCUCguCUGGCGgCAGcGGCc -5'
23233 5' -61.6 NC_005259.1 + 47278 1.1 0.000362
Target:  5'- gCGCACCGAGCAGACCGCCGUCGCCGGa -3'
miRNA:   3'- -GCGUGGCUCGUCUGGCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46904 0.73 0.177645
Target:  5'- gCGCccGCCGAGCAGuCCGCgugCGcCGCCGa -3'
miRNA:   3'- -GCG--UGGCUCGUCuGGCG---GCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 46770 0.68 0.35495
Target:  5'- uGCGCCGA-CAG-CCGCgccCGCCGGg -3'
miRNA:   3'- gCGUGGCUcGUCuGGCGgcaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46586 0.67 0.448704
Target:  5'- cCGCGCCgcccgaggcGAGCAG-CgCGUCGUUGgCGGu -3'
miRNA:   3'- -GCGUGG---------CUCGUCuG-GCGGCAGCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.