Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23236 | 5' | -67.8 | NC_005259.1 | + | 45305 | 0.66 | 0.255197 |
Target: 5'- gCGCCGGugacGCCGaGGCcGC-CGCCGaacUGCg -3' miRNA: 3'- -GCGGCC----CGGC-CCGuCGcGCGGCc--ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 20773 | 0.66 | 0.249313 |
Target: 5'- cCGCCca-CCGGGUGGCGCGUCGacaGCa -3' miRNA: 3'- -GCGGcccGGCCCGUCGCGCGGCca-CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 61068 | 0.66 | 0.249313 |
Target: 5'- uGCCGGGCaucGGCauaGGCGuCGUCGGccucggGCu -3' miRNA: 3'- gCGGCCCGgc-CCG---UCGC-GCGGCCa-----CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 41570 | 0.66 | 0.249313 |
Target: 5'- cCGCCGGaaguauCCGuugagcgugagcGGUcGCGCGUCGGUGUu -3' miRNA: 3'- -GCGGCCc-----GGC------------CCGuCGCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 27393 | 0.66 | 0.243542 |
Target: 5'- gCGgCGGuGUCGGcaGCGGCGgcaGCuCGGUGCc -3' miRNA: 3'- -GCgGCC-CGGCC--CGUCGCg--CG-GCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 26439 | 0.66 | 0.243542 |
Target: 5'- cCGCCGagcGGgCGGGcCGGUGgGCCGaUGUg -3' miRNA: 3'- -GCGGC---CCgGCCC-GUCGCgCGGCcACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 28770 | 0.66 | 0.243542 |
Target: 5'- uCGCCGGuGCCGacgaGGUAcC-CGCCGGUcGCu -3' miRNA: 3'- -GCGGCC-CGGC----CCGUcGcGCGGCCA-CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 4616 | 0.66 | 0.237882 |
Target: 5'- uGUCGGGCC-GGUGGCGCGaguuCUGGauagUGCc -3' miRNA: 3'- gCGGCCCGGcCCGUCGCGC----GGCC----ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 54500 | 0.66 | 0.237882 |
Target: 5'- uCGgCGGGCauGGCGGCGaUGUgGGgugGCg -3' miRNA: 3'- -GCgGCCCGgcCCGUCGC-GCGgCCa--CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 34176 | 0.66 | 0.237322 |
Target: 5'- uGCCGGaacacaCCGGGCAGUG-GCucggcaaCGGUGUu -3' miRNA: 3'- gCGGCCc-----GGCCCGUCGCgCG-------GCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 52249 | 0.66 | 0.234539 |
Target: 5'- cCGCCcggccccucucagggGGGCCGGGCAGacaG-GaCCGGcccgaUGCg -3' miRNA: 3'- -GCGG---------------CCCGGCCCGUCg--CgC-GGCC-----ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 41385 | 0.66 | 0.232333 |
Target: 5'- aGCUuGGCCGGuacccauGGCGCGCCgcucggGGUGCc -3' miRNA: 3'- gCGGcCCGGCCcg-----UCGCGCGG------CCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 44472 | 0.66 | 0.232333 |
Target: 5'- cCGCCGcccuGGCCGGGCcaguuGGUGaCGUagaccggGGUGCc -3' miRNA: 3'- -GCGGC----CCGGCCCG-----UCGC-GCGg------CCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 11012 | 0.66 | 0.226893 |
Target: 5'- gCGCCGGacgcGCCGaGGCAGgaguuCGCCGG-GUg -3' miRNA: 3'- -GCGGCC----CGGC-CCGUCgc---GCGGCCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 11226 | 0.66 | 0.221561 |
Target: 5'- aCGCCgcaguccucGGGCuCGGGCAucGCGCGCaccacguGG-GCu -3' miRNA: 3'- -GCGG---------CCCG-GCCCGU--CGCGCGg------CCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 45534 | 0.67 | 0.216337 |
Target: 5'- cCGCCGuGGCugcgagCGGGUuGCuCGCCGG-GCc -3' miRNA: 3'- -GCGGC-CCG------GCCCGuCGcGCGGCCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 59137 | 0.67 | 0.211218 |
Target: 5'- gCGUCGaGCUcGGCAGCgGUGCCGGggaGCu -3' miRNA: 3'- -GCGGCcCGGcCCGUCG-CGCGGCCa--CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 2146 | 0.67 | 0.206204 |
Target: 5'- cCGCaCGGuGCUGGccaGCGGCGUcgagccGCCGGUuGCc -3' miRNA: 3'- -GCG-GCC-CGGCC---CGUCGCG------CGGCCA-CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 66905 | 0.67 | 0.206204 |
Target: 5'- aCGgCGGuagauCC-GGCAGCGCGC-GGUGCu -3' miRNA: 3'- -GCgGCCc----GGcCCGUCGCGCGgCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 9598 | 0.67 | 0.201293 |
Target: 5'- gGUCuGGCCGuagagcaccguGGCAucgaacacCGCGCCGGUGCc -3' miRNA: 3'- gCGGcCCGGC-----------CCGUc-------GCGCGGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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