miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 45305 0.66 0.255197
Target:  5'- gCGCCGGugacGCCGaGGCcGC-CGCCGaacUGCg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGuCGcGCGGCc--ACG- -5'
23236 5' -67.8 NC_005259.1 + 20773 0.66 0.249313
Target:  5'- cCGCCca-CCGGGUGGCGCGUCGacaGCa -3'
miRNA:   3'- -GCGGcccGGCCCGUCGCGCGGCca-CG- -5'
23236 5' -67.8 NC_005259.1 + 61068 0.66 0.249313
Target:  5'- uGCCGGGCaucGGCauaGGCGuCGUCGGccucggGCu -3'
miRNA:   3'- gCGGCCCGgc-CCG---UCGC-GCGGCCa-----CG- -5'
23236 5' -67.8 NC_005259.1 + 41570 0.66 0.249313
Target:  5'- cCGCCGGaaguauCCGuugagcgugagcGGUcGCGCGUCGGUGUu -3'
miRNA:   3'- -GCGGCCc-----GGC------------CCGuCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 27393 0.66 0.243542
Target:  5'- gCGgCGGuGUCGGcaGCGGCGgcaGCuCGGUGCc -3'
miRNA:   3'- -GCgGCC-CGGCC--CGUCGCg--CG-GCCACG- -5'
23236 5' -67.8 NC_005259.1 + 26439 0.66 0.243542
Target:  5'- cCGCCGagcGGgCGGGcCGGUGgGCCGaUGUg -3'
miRNA:   3'- -GCGGC---CCgGCCC-GUCGCgCGGCcACG- -5'
23236 5' -67.8 NC_005259.1 + 28770 0.66 0.243542
Target:  5'- uCGCCGGuGCCGacgaGGUAcC-CGCCGGUcGCu -3'
miRNA:   3'- -GCGGCC-CGGC----CCGUcGcGCGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 54500 0.66 0.237882
Target:  5'- uCGgCGGGCauGGCGGCGaUGUgGGgugGCg -3'
miRNA:   3'- -GCgGCCCGgcCCGUCGC-GCGgCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 4616 0.66 0.237882
Target:  5'- uGUCGGGCC-GGUGGCGCGaguuCUGGauagUGCc -3'
miRNA:   3'- gCGGCCCGGcCCGUCGCGC----GGCC----ACG- -5'
23236 5' -67.8 NC_005259.1 + 34176 0.66 0.237322
Target:  5'- uGCCGGaacacaCCGGGCAGUG-GCucggcaaCGGUGUu -3'
miRNA:   3'- gCGGCCc-----GGCCCGUCGCgCG-------GCCACG- -5'
23236 5' -67.8 NC_005259.1 + 52249 0.66 0.234539
Target:  5'- cCGCCcggccccucucagggGGGCCGGGCAGacaG-GaCCGGcccgaUGCg -3'
miRNA:   3'- -GCGG---------------CCCGGCCCGUCg--CgC-GGCC-----ACG- -5'
23236 5' -67.8 NC_005259.1 + 44472 0.66 0.232333
Target:  5'- cCGCCGcccuGGCCGGGCcaguuGGUGaCGUagaccggGGUGCc -3'
miRNA:   3'- -GCGGC----CCGGCCCG-----UCGC-GCGg------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 41385 0.66 0.232333
Target:  5'- aGCUuGGCCGGuacccauGGCGCGCCgcucggGGUGCc -3'
miRNA:   3'- gCGGcCCGGCCcg-----UCGCGCGG------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 11012 0.66 0.226893
Target:  5'- gCGCCGGacgcGCCGaGGCAGgaguuCGCCGG-GUg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGUCgc---GCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 11226 0.66 0.221561
Target:  5'- aCGCCgcaguccucGGGCuCGGGCAucGCGCGCaccacguGG-GCu -3'
miRNA:   3'- -GCGG---------CCCG-GCCCGU--CGCGCGg------CCaCG- -5'
23236 5' -67.8 NC_005259.1 + 45534 0.67 0.216337
Target:  5'- cCGCCGuGGCugcgagCGGGUuGCuCGCCGG-GCc -3'
miRNA:   3'- -GCGGC-CCG------GCCCGuCGcGCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 59137 0.67 0.211218
Target:  5'- gCGUCGaGCUcGGCAGCgGUGCCGGggaGCu -3'
miRNA:   3'- -GCGGCcCGGcCCGUCG-CGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 2146 0.67 0.206204
Target:  5'- cCGCaCGGuGCUGGccaGCGGCGUcgagccGCCGGUuGCc -3'
miRNA:   3'- -GCG-GCC-CGGCC---CGUCGCG------CGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 66905 0.67 0.206204
Target:  5'- aCGgCGGuagauCC-GGCAGCGCGC-GGUGCu -3'
miRNA:   3'- -GCgGCCc----GGcCCGUCGCGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 21229 0.67 0.201293
Target:  5'- aGCCGaguacGCCucGGCAGCGCGCgGGUu- -3'
miRNA:   3'- gCGGCc----CGGc-CCGUCGCGCGgCCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.