miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 5' -55.1 NC_005259.1 + 10728 0.66 0.805818
Target:  5'- -cAugAugUCGGUGAUcaccgcgcGCUGCCGGGCg -3'
miRNA:   3'- ucUugUuuGGCCGCUA--------CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 62932 0.66 0.805818
Target:  5'- cGGuuuGC-GGCUcGCGcUGCUGCCGGGCa -3'
miRNA:   3'- -UCu--UGuUUGGcCGCuACGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 53618 0.66 0.805818
Target:  5'- -cAGCAGGCguCGaGCGGUGCCGuuG-GCc -3'
miRNA:   3'- ucUUGUUUG--GC-CGCUACGGCggCuCG- -5'
23241 5' -55.1 NC_005259.1 + 43945 0.66 0.805818
Target:  5'- -uGACAgcgucggcGAUgGGCGggGCCGCCGccugaccgagGGCg -3'
miRNA:   3'- ucUUGU--------UUGgCCGCuaCGGCGGC----------UCG- -5'
23241 5' -55.1 NC_005259.1 + 24014 0.66 0.805818
Target:  5'- gAGGACAccacggGGCUGGCGAaaUGgaaCCGCCGcaacgucgucGGCg -3'
miRNA:   3'- -UCUUGU------UUGGCCGCU--AC---GGCGGC----------UCG- -5'
23241 5' -55.1 NC_005259.1 + 39762 0.66 0.805818
Target:  5'- cGGcAGCAGcggcagccugcuGCUGGUGAUcgGUgCGCCGAGCu -3'
miRNA:   3'- -UC-UUGUU------------UGGCCGCUA--CG-GCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 43075 0.66 0.805818
Target:  5'- aGGAacGCGAGCCcGU--UGCCGCCGAa- -3'
miRNA:   3'- -UCU--UGUUUGGcCGcuACGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 13225 0.66 0.805818
Target:  5'- uGGGCcucGACCGGCcaccGUGaggGCCGAGCa -3'
miRNA:   3'- uCUUGu--UUGGCCGc---UACgg-CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 23273 0.66 0.805818
Target:  5'- uGAGCAccaaGACCgGGCGcgGUgGuuGGGUa -3'
miRNA:   3'- uCUUGU----UUGG-CCGCuaCGgCggCUCG- -5'
23241 5' -55.1 NC_005259.1 + 7851 0.66 0.80488
Target:  5'- cGGGACGGACCGcGCcgaccccGGUGgC-CCGAGUg -3'
miRNA:   3'- -UCUUGUUUGGC-CG-------CUACgGcGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 45636 0.66 0.796356
Target:  5'- cGGGCAGcgcGCCGGU---GCCGCCGuGa -3'
miRNA:   3'- uCUUGUU---UGGCCGcuaCGGCGGCuCg -5'
23241 5' -55.1 NC_005259.1 + 43832 0.66 0.796356
Target:  5'- cGGACAcagGGCCGcCGcucGCCauGCCGAGCg -3'
miRNA:   3'- uCUUGU---UUGGCcGCua-CGG--CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 56301 0.66 0.794443
Target:  5'- cAGAcCAcguGGCCGGacccucgucGCCGUCGAGCa -3'
miRNA:   3'- -UCUuGU---UUGGCCgcua-----CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 56406 0.66 0.786727
Target:  5'- cGAugGugcCCGGC----CCGCCGAGCu -3'
miRNA:   3'- uCUugUuu-GGCCGcuacGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 23865 0.66 0.785756
Target:  5'- -cGGCAcACCGaGUGGaugcgcuauccgcUGCCGCcCGAGCc -3'
miRNA:   3'- ucUUGUuUGGC-CGCU-------------ACGGCG-GCUCG- -5'
23241 5' -55.1 NC_005259.1 + 16101 0.66 0.776943
Target:  5'- uGGAGauguACCGGCGcggaAUGaCCGaCGAGCu -3'
miRNA:   3'- -UCUUguu-UGGCCGC----UAC-GGCgGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 62858 0.66 0.776943
Target:  5'- cGAGCAGccGCuCGGCGcgagguagGCCGCUcggucauuGAGCg -3'
miRNA:   3'- uCUUGUU--UG-GCCGCua------CGGCGG--------CUCG- -5'
23241 5' -55.1 NC_005259.1 + 34900 0.66 0.767013
Target:  5'- cAGGACGGGCCGcuCGGgcaucacacUGCUGCCucGGGCg -3'
miRNA:   3'- -UCUUGUUUGGCc-GCU---------ACGGCGG--CUCG- -5'
23241 5' -55.1 NC_005259.1 + 46676 0.66 0.767013
Target:  5'- -cGGCGAGCuCGGCcuGA-GCCGCCGccGCg -3'
miRNA:   3'- ucUUGUUUG-GCCG--CUaCGGCGGCu-CG- -5'
23241 5' -55.1 NC_005259.1 + 14715 0.66 0.767013
Target:  5'- cGAACAGcacGCCGcGCuc-GUCGCCGAGa -3'
miRNA:   3'- uCUUGUU---UGGC-CGcuaCGGCGGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.