miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 3' -61 NC_005259.1 + 55869 0.66 0.49384
Target:  5'- aACUCGCCgaGCGCCUcGCCccGAC-CUCGg -3'
miRNA:   3'- gUGAGUGG--CGCGGGaCGG--CUGcGAGU- -5'
23246 3' -61 NC_005259.1 + 846 0.66 0.49384
Target:  5'- aGgUCGCUGCGCag-GCCGagugcgagcguGCGCUCAa -3'
miRNA:   3'- gUgAGUGGCGCGggaCGGC-----------UGCGAGU- -5'
23246 3' -61 NC_005259.1 + 6928 0.66 0.484075
Target:  5'- aAC-CGCCGcCGCCUugagGCCGA-GCUCGc -3'
miRNA:   3'- gUGaGUGGC-GCGGGa---CGGCUgCGAGU- -5'
23246 3' -61 NC_005259.1 + 4649 0.66 0.481163
Target:  5'- cCGCgCACCGCGCCuacgggcacgguguCUgcacuggcucggGCCGACaGCUCGg -3'
miRNA:   3'- -GUGaGUGGCGCGG--------------GA------------CGGCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 48020 0.66 0.474402
Target:  5'- uGCUgCACCGCGCCCa--CGAUGUUg- -3'
miRNA:   3'- gUGA-GUGGCGCGGGacgGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 22636 0.66 0.474402
Target:  5'- -cUUCGCCGCGUCg-GUCGACGC-CGc -3'
miRNA:   3'- guGAGUGGCGCGGgaCGGCUGCGaGU- -5'
23246 3' -61 NC_005259.1 + 9701 0.66 0.464828
Target:  5'- cCGCUCACUGgGCaCCguccucggGCCGGucgaGCUCGc -3'
miRNA:   3'- -GUGAGUGGCgCG-GGa-------CGGCUg---CGAGU- -5'
23246 3' -61 NC_005259.1 + 32413 0.66 0.464828
Target:  5'- aCACguagCACCGUGUCCU-CgGGCaGCUCGg -3'
miRNA:   3'- -GUGa---GUGGCGCGGGAcGgCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 14328 0.66 0.464828
Target:  5'- ---aCGCCGcCGCCCgcgugcgggccGCCGACGCcaUCAa -3'
miRNA:   3'- gugaGUGGC-GCGGGa----------CGGCUGCG--AGU- -5'
23246 3' -61 NC_005259.1 + 36721 0.67 0.436729
Target:  5'- cCGCUCgacccGCCGCGCCC-GCCGggauACGUg-- -3'
miRNA:   3'- -GUGAG-----UGGCGCGGGaCGGC----UGCGagu -5'
23246 3' -61 NC_005259.1 + 1837 0.67 0.427582
Target:  5'- uGCUCGCCGCuGCC--GCCGAgGC-CGa -3'
miRNA:   3'- gUGAGUGGCG-CGGgaCGGCUgCGaGU- -5'
23246 3' -61 NC_005259.1 + 1919 0.67 0.427582
Target:  5'- aGCgCGCCGC-CCCaaaaUGCCGACGgUCc -3'
miRNA:   3'- gUGaGUGGCGcGGG----ACGGCUGCgAGu -5'
23246 3' -61 NC_005259.1 + 24132 0.67 0.426673
Target:  5'- aCAC-CGCCGcCGCCCUGCuCGccgaguuGCGCg-- -3'
miRNA:   3'- -GUGaGUGGC-GCGGGACG-GC-------UGCGagu -5'
23246 3' -61 NC_005259.1 + 11198 0.67 0.418549
Target:  5'- gCAgUCACCGCaCCCuuUGCCGuCGCa-- -3'
miRNA:   3'- -GUgAGUGGCGcGGG--ACGGCuGCGagu -5'
23246 3' -61 NC_005259.1 + 25943 0.67 0.418549
Target:  5'- gCGCaCGCCgGUGCCCggcccGCCGACGCcugCGa -3'
miRNA:   3'- -GUGaGUGG-CGCGGGa----CGGCUGCGa--GU- -5'
23246 3' -61 NC_005259.1 + 45514 0.67 0.409633
Target:  5'- gGC-CACCGCGCCgguguuggCcGCCGugGCUg- -3'
miRNA:   3'- gUGaGUGGCGCGG--------GaCGGCugCGAgu -5'
23246 3' -61 NC_005259.1 + 33234 0.67 0.395616
Target:  5'- cCGgUCACCGCguacgugccagaucuGCCCgcagcGCCGAUGCUg- -3'
miRNA:   3'- -GUgAGUGGCG---------------CGGGa----CGGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 20258 0.67 0.392161
Target:  5'- gACaCGCCGCGCCggGCCGAUGgaUCGu -3'
miRNA:   3'- gUGaGUGGCGCGGgaCGGCUGCg-AGU- -5'
23246 3' -61 NC_005259.1 + 23902 0.67 0.392161
Target:  5'- aGC-CGCCGCGCCC-GCCGucgaaauacaACGgUCGg -3'
miRNA:   3'- gUGaGUGGCGCGGGaCGGC----------UGCgAGU- -5'
23246 3' -61 NC_005259.1 + 51768 0.68 0.383608
Target:  5'- gCGCUCGgCgaGCGCCUUGagguauUCGGCGCUCGg -3'
miRNA:   3'- -GUGAGUgG--CGCGGGAC------GGCUGCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.