miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 68787 0.66 0.727966
Target:  5'- gCAGgUCGuacGCCGgGGCgGUGUCGGuGCCc -3'
miRNA:   3'- aGUUgAGC---UGGUgCUG-CACGGCC-CGG- -5'
23247 3' -57.2 NC_005259.1 + 48496 0.66 0.727966
Target:  5'- cUCGACgcgcuugagGGCCGCGACuUGCCGcacuGCCg -3'
miRNA:   3'- -AGUUGag-------CUGGUGCUGcACGGCc---CGG- -5'
23247 3' -57.2 NC_005259.1 + 9512 0.66 0.727966
Target:  5'- --cGCUCG-UCGCGcGCGUcgaccgccGCCGGGUCa -3'
miRNA:   3'- aguUGAGCuGGUGC-UGCA--------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 66709 0.66 0.727966
Target:  5'- -gGugUCGugCACGAUGaUGCCc-GCCg -3'
miRNA:   3'- agUugAGCugGUGCUGC-ACGGccCGG- -5'
23247 3' -57.2 NC_005259.1 + 42318 0.66 0.721847
Target:  5'- cCGACUCgGgcacccucgucguaaACCACGggGCGaGCuCGGGCCg -3'
miRNA:   3'- aGUUGAG-C---------------UGGUGC--UGCaCG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 51549 0.66 0.717751
Target:  5'- -gGGCaaGugCACGACGU-UgGGGCCa -3'
miRNA:   3'- agUUGagCugGUGCUGCAcGgCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 61855 0.66 0.717751
Target:  5'- gCAcCUCGGCCACcgccucGCGUGCCGcGUg -3'
miRNA:   3'- aGUuGAGCUGGUGc-----UGCACGGCcCGg -5'
23247 3' -57.2 NC_005259.1 + 37935 0.66 0.717751
Target:  5'- cUCAcccCUCGACCACGuagauacCGU-UCGGGCUc -3'
miRNA:   3'- -AGUu--GAGCUGGUGCu------GCAcGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 10213 0.66 0.707459
Target:  5'- gCAGCUCGACCACcacgagauGGCGcucacugagcacgGCggugugcuugaugagCGGGCCg -3'
miRNA:   3'- aGUUGAGCUGGUG--------CUGCa------------CG---------------GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 66244 0.66 0.707459
Target:  5'- gCAGCcaUCGACgcagCGCGGCccgcGCCGGGCg -3'
miRNA:   3'- aGUUG--AGCUG----GUGCUGca--CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 37282 0.66 0.707459
Target:  5'- cCGGCagGACuugCAUGGCGgugcccGCCGGGUCa -3'
miRNA:   3'- aGUUGagCUG---GUGCUGCa-----CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 562 0.66 0.707459
Target:  5'- -uGACcCGcACCACGGCGUGg-GGGUCg -3'
miRNA:   3'- agUUGaGC-UGGUGCUGCACggCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 4318 0.66 0.697098
Target:  5'- -gAGCgCGACCAaccuCGUGCCGGaCCu -3'
miRNA:   3'- agUUGaGCUGGUgcu-GCACGGCCcGG- -5'
23247 3' -57.2 NC_005259.1 + 41489 0.66 0.697098
Target:  5'- -gAGCaCGACCuCGGCgGUGgCGGGCa -3'
miRNA:   3'- agUUGaGCUGGuGCUG-CACgGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 60300 0.66 0.697098
Target:  5'- gUCggUgCGGCCACgGACGgcgaaaCCGGGCg -3'
miRNA:   3'- -AGuuGaGCUGGUG-CUGCac----GGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 46774 0.66 0.697098
Target:  5'- cCGACa--GCCGCG-CccGCCGGGCCg -3'
miRNA:   3'- aGUUGagcUGGUGCuGcaCGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 63673 0.66 0.697098
Target:  5'- aCAcCUCGGgCAcCGGCGcGCCGGGg- -3'
miRNA:   3'- aGUuGAGCUgGU-GCUGCaCGGCCCgg -5'
23247 3' -57.2 NC_005259.1 + 22924 0.66 0.697098
Target:  5'- ---cCUCGugCuCGACcucGCCGGGUCa -3'
miRNA:   3'- aguuGAGCugGuGCUGca-CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 45526 0.66 0.690853
Target:  5'- -gGugUUGGCCGcCGugGcUgcgagcggguugcucGCCGGGCCa -3'
miRNA:   3'- agUugAGCUGGU-GCugC-A---------------CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 6309 0.66 0.686679
Target:  5'- -gAugUCGACggCAUGACcuaccuUGCCGGGCa -3'
miRNA:   3'- agUugAGCUG--GUGCUGc-----ACGGCCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.