miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23255 5' -54.9 NC_005259.1 + 7661 0.66 0.829951
Target:  5'- cGUCGuCGUGAgcgccccgccUC-GUGGGGUgGCCCg -3'
miRNA:   3'- cCAGCuGUACU----------AGuCGCUCCGgUGGG- -5'
23255 5' -54.9 NC_005259.1 + 6656 0.66 0.829068
Target:  5'- cGGUCGAgggugucCGUGA-CGcGCGA-GCUGCCCg -3'
miRNA:   3'- -CCAGCU-------GUACUaGU-CGCUcCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 56792 0.66 0.829068
Target:  5'- cGUUGccgaugaACA-GAUCGGgGucgguGGCCACCCa -3'
miRNA:   3'- cCAGC-------UGUaCUAGUCgCu----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 47585 0.66 0.824628
Target:  5'- -cUCGGCGguguugccgaauaucUGGUCGGCGAGGCUg--- -3'
miRNA:   3'- ccAGCUGU---------------ACUAGUCGCUCCGGuggg -5'
23255 5' -54.9 NC_005259.1 + 23347 0.66 0.82104
Target:  5'- gGGcUCGAgGcUGccu-GCGAGGCCGCCg -3'
miRNA:   3'- -CC-AGCUgU-ACuaguCGCUCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 26266 0.66 0.82104
Target:  5'- cGGUCucCAUGAugUCGcCGGuGCCGCCCu -3'
miRNA:   3'- -CCAGcuGUACU--AGUcGCUcCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 50502 0.66 0.82104
Target:  5'- cGGUCGAUGUGggCGGUGc-GCUGCaCCu -3'
miRNA:   3'- -CCAGCUGUACuaGUCGCucCGGUG-GG- -5'
23255 5' -54.9 NC_005259.1 + 45531 0.66 0.815602
Target:  5'- uGGcCGcCGUGG-CuGCGAgcggguugcucgccgGGCCACCCu -3'
miRNA:   3'- -CCaGCuGUACUaGuCGCU---------------CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 63545 0.66 0.81194
Target:  5'- -uUCGAgGUGcUCGGC--GGCCACCg -3'
miRNA:   3'- ccAGCUgUACuAGUCGcuCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 14079 0.66 0.81194
Target:  5'- cGGUgGccuACGUGcgCAGCGAGGUCGa-- -3'
miRNA:   3'- -CCAgC---UGUACuaGUCGCUCCGGUggg -5'
23255 5' -54.9 NC_005259.1 + 42362 0.66 0.802659
Target:  5'- cGGUaGACAUGAUCguugaggaaGGCGggcAGGCCGgUCc -3'
miRNA:   3'- -CCAgCUGUACUAG---------UCGC---UCCGGUgGG- -5'
23255 5' -54.9 NC_005259.1 + 44494 0.66 0.793208
Target:  5'- uGGU-GACGUaGAcCGGgGugcccuGGCCACCCa -3'
miRNA:   3'- -CCAgCUGUA-CUaGUCgCu-----CCGGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 41597 0.66 0.793208
Target:  5'- cGGUCGcGCGUcgguguuucgGAUC-GCGAGGCUgACCa -3'
miRNA:   3'- -CCAGC-UGUA----------CUAGuCGCUCCGG-UGGg -5'
23255 5' -54.9 NC_005259.1 + 61595 0.67 0.787459
Target:  5'- cGGUgGGCcgguggGGUCGGCGGGGaacagcagaccggcaCCGCCg -3'
miRNA:   3'- -CCAgCUGua----CUAGUCGCUCC---------------GGUGGg -5'
23255 5' -54.9 NC_005259.1 + 42763 0.67 0.783596
Target:  5'- -cUCGAUcUGcUCGGCGgucucgGGGCCGCCa -3'
miRNA:   3'- ccAGCUGuACuAGUCGC------UCCGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 36449 0.67 0.783596
Target:  5'- aGGUCGACcgcGUCgagGGUGAGcaCCGCCCa -3'
miRNA:   3'- -CCAGCUGuacUAG---UCGCUCc-GGUGGG- -5'
23255 5' -54.9 NC_005259.1 + 6439 0.67 0.783596
Target:  5'- uGUCGGCAccgucgcgcUGAUCGGC-AGcGUCGCCg -3'
miRNA:   3'- cCAGCUGU---------ACUAGUCGcUC-CGGUGGg -5'
23255 5' -54.9 NC_005259.1 + 67690 0.67 0.773834
Target:  5'- gGGUCaucaauGAuCAUGAgaUCGGCG-GGCaUACCCg -3'
miRNA:   3'- -CCAG------CU-GUACU--AGUCGCuCCG-GUGGG- -5'
23255 5' -54.9 NC_005259.1 + 2093 0.67 0.773834
Target:  5'- -cUCGAUuucAUCGGCGAGGCCAa-- -3'
miRNA:   3'- ccAGCUGuacUAGUCGCUCCGGUggg -5'
23255 5' -54.9 NC_005259.1 + 43227 0.67 0.773834
Target:  5'- cGcCGAgcUGAUgAGCGAGcugacgauGCCGCCCg -3'
miRNA:   3'- cCaGCUguACUAgUCGCUC--------CGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.