Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23256 | 3' | -64.7 | NC_005259.1 | + | 33259 | 0.66 | 0.350104 |
Target: 5'- uGCCCGCa-GCGCCGau-GCugCGCa -3' miRNA: 3'- gCGGGUGgcCGUGGCgguCGugGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 47277 | 0.66 | 0.350104 |
Target: 5'- aGCgCACCGaGCagACCGCCGuCGCCGg- -3' miRNA: 3'- gCGgGUGGC-CG--UGGCGGUcGUGGCgg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 49445 | 0.66 | 0.342431 |
Target: 5'- cCGCCUuggUCGGCAgCCGgaugcCCAGCAggUCGCCc -3' miRNA: 3'- -GCGGGu--GGCCGU-GGC-----GGUCGU--GGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 15849 | 0.66 | 0.342431 |
Target: 5'- gGCUCG--GGCAUCGCCaAGCucGCCGCUc -3' miRNA: 3'- gCGGGUggCCGUGGCGG-UCG--UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 23473 | 0.66 | 0.342431 |
Target: 5'- gGCCU--CGGCAUUGUCGGUGCCgacGCCa -3' miRNA: 3'- gCGGGugGCCGUGGCGGUCGUGG---CGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45248 | 0.66 | 0.342431 |
Target: 5'- aGgUCGCCGGuCAUCGCgAaCGCCGUCa -3' miRNA: 3'- gCgGGUGGCC-GUGGCGgUcGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45664 | 0.66 | 0.342431 |
Target: 5'- --aCCGCCGu--CCGCgUAGUACCGCCu -3' miRNA: 3'- gcgGGUGGCcguGGCG-GUCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 6090 | 0.66 | 0.342431 |
Target: 5'- aCGCCCucaacGCCGaG-AUCGCCgaGGCcgagGCCGCCg -3' miRNA: 3'- -GCGGG-----UGGC-CgUGGCGG--UCG----UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 2224 | 0.66 | 0.341671 |
Target: 5'- gCGCCCGgccucgccauuugUCGGCGacaGCCGGUACgGCg -3' miRNA: 3'- -GCGGGU-------------GGCCGUgg-CGGUCGUGgCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 31740 | 0.66 | 0.337134 |
Target: 5'- gCGCCUGCCGcGagcgcuggugucccCACCGCCccgucaucgauguGCugCGCCu -3' miRNA: 3'- -GCGGGUGGC-C--------------GUGGCGGu------------CGugGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 46783 | 0.66 | 0.334881 |
Target: 5'- gCGCCCGCCGG-GCCGaacaCCgAGC-CUGCg -3' miRNA: 3'- -GCGGGUGGCCgUGGC----GG-UCGuGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 47318 | 0.66 | 0.334881 |
Target: 5'- gGCCUgACCGGCgGCCuugGUCAGCcCCGUg -3' miRNA: 3'- gCGGG-UGGCCG-UGG---CGGUCGuGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 38942 | 0.66 | 0.334881 |
Target: 5'- uGUgC-CCGGUGCCGCU---GCCGCCg -3' miRNA: 3'- gCGgGuGGCCGUGGCGGucgUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 35184 | 0.66 | 0.334133 |
Target: 5'- gGCgUGCCGGUgagcagcaccguGCCGCCugaGGCggcgaggaacgugACCGCCa -3' miRNA: 3'- gCGgGUGGCCG------------UGGCGG---UCG-------------UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 50534 | 0.66 | 0.327453 |
Target: 5'- gCGCUCGCCucgGGCgaggaaACCGCaCGGCagaauGCUGCCc -3' miRNA: 3'- -GCGGGUGG---CCG------UGGCG-GUCG-----UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 67974 | 0.66 | 0.327453 |
Target: 5'- gCGCgCAgCGGCGUgGCCAcCGCCGCg -3' miRNA: 3'- -GCGgGUgGCCGUGgCGGUcGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 13335 | 0.66 | 0.327453 |
Target: 5'- -aCCCACggCGGgACCGCCc-CGCCGCa -3' miRNA: 3'- gcGGGUG--GCCgUGGCGGucGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 53857 | 0.66 | 0.327453 |
Target: 5'- uGCCCGCCGacCACaGCUcaAGCGCuaCGCCg -3' miRNA: 3'- gCGGGUGGCc-GUGgCGG--UCGUG--GCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 28924 | 0.66 | 0.326717 |
Target: 5'- cCGCCUcagccagaagcaGgCGGCACgauccugCGCC-GCAUCGCCg -3' miRNA: 3'- -GCGGG------------UgGCCGUG-------GCGGuCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 24550 | 0.66 | 0.320148 |
Target: 5'- aGUCCAgaUCGGCGggguguacUCGUgGGCACCGCa -3' miRNA: 3'- gCGGGU--GGCCGU--------GGCGgUCGUGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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