miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 47277 0.66 0.350104
Target:  5'- aGCgCACCGaGCagACCGCCGuCGCCGg- -3'
miRNA:   3'- gCGgGUGGC-CG--UGGCGGUcGUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 33259 0.66 0.350104
Target:  5'- uGCCCGCa-GCGCCGau-GCugCGCa -3'
miRNA:   3'- gCGGGUGgcCGUGGCgguCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 45664 0.66 0.342431
Target:  5'- --aCCGCCGu--CCGCgUAGUACCGCCu -3'
miRNA:   3'- gcgGGUGGCcguGGCG-GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6090 0.66 0.342431
Target:  5'- aCGCCCucaacGCCGaG-AUCGCCgaGGCcgagGCCGCCg -3'
miRNA:   3'- -GCGGG-----UGGC-CgUGGCGG--UCG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45248 0.66 0.342431
Target:  5'- aGgUCGCCGGuCAUCGCgAaCGCCGUCa -3'
miRNA:   3'- gCgGGUGGCC-GUGGCGgUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23473 0.66 0.342431
Target:  5'- gGCCU--CGGCAUUGUCGGUGCCgacGCCa -3'
miRNA:   3'- gCGGGugGCCGUGGCGGUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 49445 0.66 0.342431
Target:  5'- cCGCCUuggUCGGCAgCCGgaugcCCAGCAggUCGCCc -3'
miRNA:   3'- -GCGGGu--GGCCGU-GGC-----GGUCGU--GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 15849 0.66 0.342431
Target:  5'- gGCUCG--GGCAUCGCCaAGCucGCCGCUc -3'
miRNA:   3'- gCGGGUggCCGUGGCGG-UCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 2224 0.66 0.341671
Target:  5'- gCGCCCGgccucgccauuugUCGGCGacaGCCGGUACgGCg -3'
miRNA:   3'- -GCGGGU-------------GGCCGUgg-CGGUCGUGgCGg -5'
23256 3' -64.7 NC_005259.1 + 31740 0.66 0.337134
Target:  5'- gCGCCUGCCGcGagcgcuggugucccCACCGCCccgucaucgauguGCugCGCCu -3'
miRNA:   3'- -GCGGGUGGC-C--------------GUGGCGGu------------CGugGCGG- -5'
23256 3' -64.7 NC_005259.1 + 47318 0.66 0.334881
Target:  5'- gGCCUgACCGGCgGCCuugGUCAGCcCCGUg -3'
miRNA:   3'- gCGGG-UGGCCG-UGG---CGGUCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 38942 0.66 0.334881
Target:  5'- uGUgC-CCGGUGCCGCU---GCCGCCg -3'
miRNA:   3'- gCGgGuGGCCGUGGCGGucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46783 0.66 0.334881
Target:  5'- gCGCCCGCCGG-GCCGaacaCCgAGC-CUGCg -3'
miRNA:   3'- -GCGGGUGGCCgUGGC----GG-UCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 35184 0.66 0.334133
Target:  5'- gGCgUGCCGGUgagcagcaccguGCCGCCugaGGCggcgaggaacgugACCGCCa -3'
miRNA:   3'- gCGgGUGGCCG------------UGGCGG---UCG-------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 67974 0.66 0.327453
Target:  5'- gCGCgCAgCGGCGUgGCCAcCGCCGCg -3'
miRNA:   3'- -GCGgGUgGCCGUGgCGGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 13335 0.66 0.327453
Target:  5'- -aCCCACggCGGgACCGCCc-CGCCGCa -3'
miRNA:   3'- gcGGGUG--GCCgUGGCGGucGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 53857 0.66 0.327453
Target:  5'- uGCCCGCCGacCACaGCUcaAGCGCuaCGCCg -3'
miRNA:   3'- gCGGGUGGCc-GUGgCGG--UCGUG--GCGG- -5'
23256 3' -64.7 NC_005259.1 + 50534 0.66 0.327453
Target:  5'- gCGCUCGCCucgGGCgaggaaACCGCaCGGCagaauGCUGCCc -3'
miRNA:   3'- -GCGGGUGG---CCG------UGGCG-GUCG-----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28924 0.66 0.326717
Target:  5'- cCGCCUcagccagaagcaGgCGGCACgauccugCGCC-GCAUCGCCg -3'
miRNA:   3'- -GCGGG------------UgGCCGUG-------GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 24550 0.66 0.320148
Target:  5'- aGUCCAgaUCGGCGggguguacUCGUgGGCACCGCa -3'
miRNA:   3'- gCGGGU--GGCCGU--------GGCGgUCGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.