miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 5' -55.6 NC_005259.1 + 19101 0.66 0.785158
Target:  5'- gCGCGAaCUCACCGGcGCUGgugugugcGUCGUg -3'
miRNA:   3'- -GUGCUaGAGUGGCUcCGACau------CGGCG- -5'
23279 5' -55.6 NC_005259.1 + 54637 0.66 0.785158
Target:  5'- aCGCGA---CACCGAGGCaaucaGGUCGCu -3'
miRNA:   3'- -GUGCUagaGUGGCUCCGaca--UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 62111 0.66 0.784187
Target:  5'- uCGCGcucguaGUCagUCACCGAGGUgaucGUcucgaccaccucaGGCCGCa -3'
miRNA:   3'- -GUGC------UAG--AGUGGCUCCGa---CA-------------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 1170 0.66 0.775384
Target:  5'- -uCGAUCcCGCCGAcaucGUUG-AGCCGCu -3'
miRNA:   3'- guGCUAGaGUGGCUc---CGACaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 63104 0.66 0.775384
Target:  5'- uGCGAaCUCACggcagccguCGAGGgUggugaggucGUAGCCGCu -3'
miRNA:   3'- gUGCUaGAGUG---------GCUCCgA---------CAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 46277 0.66 0.75542
Target:  5'- gCGCGAgguUCUgcaaCAgCGGGGCcgccGUGGCUGCg -3'
miRNA:   3'- -GUGCU---AGA----GUgGCUCCGa---CAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 51202 0.66 0.75542
Target:  5'- -cCGGUCUUACCGuuGCgGUAGaucaCCGCc -3'
miRNA:   3'- guGCUAGAGUGGCucCGaCAUC----GGCG- -5'
23279 5' -55.6 NC_005259.1 + 58847 0.66 0.745251
Target:  5'- -uCGGUCUCACCcucGGGCUc--GCCGUc -3'
miRNA:   3'- guGCUAGAGUGGc--UCCGAcauCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 14726 0.66 0.745251
Target:  5'- cCGCGcUCgUCGCCGAGauguacgcGCUGgccgGGCCGg -3'
miRNA:   3'- -GUGCuAG-AGUGGCUC--------CGACa---UCGGCg -5'
23279 5' -55.6 NC_005259.1 + 48422 0.66 0.734972
Target:  5'- cCGCGAcCgccacCACCGAGGCgcgagGcAGCgGCa -3'
miRNA:   3'- -GUGCUaGa----GUGGCUCCGa----CaUCGgCG- -5'
23279 5' -55.6 NC_005259.1 + 26395 0.66 0.734972
Target:  5'- uCGCGAUUccgaCGCCGGGcGCggcgGU-GCCGCc -3'
miRNA:   3'- -GUGCUAGa---GUGGCUC-CGa---CAuCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 39060 0.67 0.724593
Target:  5'- gGCGAUgUUGCCGAGcuuGCUGgcGUCGa -3'
miRNA:   3'- gUGCUAgAGUGGCUC---CGACauCGGCg -5'
23279 5' -55.6 NC_005259.1 + 3978 0.67 0.724593
Target:  5'- aGCGGUCccgcgagCACgCGAuGGCg--GGCCGCg -3'
miRNA:   3'- gUGCUAGa------GUG-GCU-CCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 60764 0.67 0.714125
Target:  5'- -uCGG-CUCGgCGAGGUUG-GGCUGCg -3'
miRNA:   3'- guGCUaGAGUgGCUCCGACaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 27891 0.67 0.70358
Target:  5'- cCACGAUC-CACCuGGGGUcGccgAGaCCGCg -3'
miRNA:   3'- -GUGCUAGaGUGG-CUCCGaCa--UC-GGCG- -5'
23279 5' -55.6 NC_005259.1 + 60884 0.67 0.70358
Target:  5'- gACGGUgUCACCGAaugcgGGCU-UGGCCa- -3'
miRNA:   3'- gUGCUAgAGUGGCU-----CCGAcAUCGGcg -5'
23279 5' -55.6 NC_005259.1 + 45308 0.67 0.692968
Target:  5'- -cCGGUgaCGCCGAGGCc---GCCGCc -3'
miRNA:   3'- guGCUAgaGUGGCUCCGacauCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 40139 0.67 0.692968
Target:  5'- gGCGAgCUCGCCGucGGUUGUcgguGcCCGCc -3'
miRNA:   3'- gUGCUaGAGUGGCu-CCGACAu---C-GGCG- -5'
23279 5' -55.6 NC_005259.1 + 67943 0.67 0.671584
Target:  5'- gAUGAUCUUGCggugCGGGuuguGCUGUAGCgCGCg -3'
miRNA:   3'- gUGCUAGAGUG----GCUC----CGACAUCG-GCG- -5'
23279 5' -55.6 NC_005259.1 + 15361 0.68 0.621987
Target:  5'- --aGuAUCUCGCCGAucugGGCgagcugccgcaaccGUGGCCGCg -3'
miRNA:   3'- gugC-UAGAGUGGCU----CCGa-------------CAUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.