Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23279 | 5' | -55.6 | NC_005259.1 | + | 54637 | 0.66 | 0.785158 |
Target: 5'- aCGCGA---CACCGAGGCaaucaGGUCGCu -3' miRNA: 3'- -GUGCUagaGUGGCUCCGaca--UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 19101 | 0.66 | 0.785158 |
Target: 5'- gCGCGAaCUCACCGGcGCUGgugugugcGUCGUg -3' miRNA: 3'- -GUGCUaGAGUGGCUcCGACau------CGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 62111 | 0.66 | 0.784187 |
Target: 5'- uCGCGcucguaGUCagUCACCGAGGUgaucGUcucgaccaccucaGGCCGCa -3' miRNA: 3'- -GUGC------UAG--AGUGGCUCCGa---CA-------------UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 1170 | 0.66 | 0.775384 |
Target: 5'- -uCGAUCcCGCCGAcaucGUUG-AGCCGCu -3' miRNA: 3'- guGCUAGaGUGGCUc---CGACaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 63104 | 0.66 | 0.775384 |
Target: 5'- uGCGAaCUCACggcagccguCGAGGgUggugaggucGUAGCCGCu -3' miRNA: 3'- gUGCUaGAGUG---------GCUCCgA---------CAUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 51202 | 0.66 | 0.75542 |
Target: 5'- -cCGGUCUUACCGuuGCgGUAGaucaCCGCc -3' miRNA: 3'- guGCUAGAGUGGCucCGaCAUC----GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 46277 | 0.66 | 0.75542 |
Target: 5'- gCGCGAgguUCUgcaaCAgCGGGGCcgccGUGGCUGCg -3' miRNA: 3'- -GUGCU---AGA----GUgGCUCCGa---CAUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 14726 | 0.66 | 0.745251 |
Target: 5'- cCGCGcUCgUCGCCGAGauguacgcGCUGgccgGGCCGg -3' miRNA: 3'- -GUGCuAG-AGUGGCUC--------CGACa---UCGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 58847 | 0.66 | 0.745251 |
Target: 5'- -uCGGUCUCACCcucGGGCUc--GCCGUc -3' miRNA: 3'- guGCUAGAGUGGc--UCCGAcauCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 26395 | 0.66 | 0.734972 |
Target: 5'- uCGCGAUUccgaCGCCGGGcGCggcgGU-GCCGCc -3' miRNA: 3'- -GUGCUAGa---GUGGCUC-CGa---CAuCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 48422 | 0.66 | 0.734972 |
Target: 5'- cCGCGAcCgccacCACCGAGGCgcgagGcAGCgGCa -3' miRNA: 3'- -GUGCUaGa----GUGGCUCCGa----CaUCGgCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 3978 | 0.67 | 0.724593 |
Target: 5'- aGCGGUCccgcgagCACgCGAuGGCg--GGCCGCg -3' miRNA: 3'- gUGCUAGa------GUG-GCU-CCGacaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 39060 | 0.67 | 0.724593 |
Target: 5'- gGCGAUgUUGCCGAGcuuGCUGgcGUCGa -3' miRNA: 3'- gUGCUAgAGUGGCUC---CGACauCGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60764 | 0.67 | 0.714125 |
Target: 5'- -uCGG-CUCGgCGAGGUUG-GGCUGCg -3' miRNA: 3'- guGCUaGAGUgGCUCCGACaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 27891 | 0.67 | 0.70358 |
Target: 5'- cCACGAUC-CACCuGGGGUcGccgAGaCCGCg -3' miRNA: 3'- -GUGCUAGaGUGG-CUCCGaCa--UC-GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60884 | 0.67 | 0.70358 |
Target: 5'- gACGGUgUCACCGAaugcgGGCU-UGGCCa- -3' miRNA: 3'- gUGCUAgAGUGGCU-----CCGAcAUCGGcg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 40139 | 0.67 | 0.692968 |
Target: 5'- gGCGAgCUCGCCGucGGUUGUcgguGcCCGCc -3' miRNA: 3'- gUGCUaGAGUGGCu-CCGACAu---C-GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 45308 | 0.67 | 0.692968 |
Target: 5'- -cCGGUgaCGCCGAGGCc---GCCGCc -3' miRNA: 3'- guGCUAgaGUGGCUCCGacauCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 67943 | 0.67 | 0.671584 |
Target: 5'- gAUGAUCUUGCggugCGGGuuguGCUGUAGCgCGCg -3' miRNA: 3'- gUGCUAGAGUG----GCUC----CGACAUCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 15361 | 0.68 | 0.621987 |
Target: 5'- --aGuAUCUCGCCGAucugGGCgagcugccgcaaccGUGGCCGCg -3' miRNA: 3'- gugC-UAGAGUGGCU----CCGa-------------CAUCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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