miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23317 3' -61.8 NC_005259.1 + 31355 0.66 0.508876
Target:  5'- uGUGACCgACGauguuacCGaGACCGUCCCGUa -3'
miRNA:   3'- cCAUUGGgUGCc------GCcCUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 59624 0.66 0.508876
Target:  5'- aGgcACCCACGGCGu--CUGCCCUu- -3'
miRNA:   3'- cCauUGGGUGCCGCccuGGCGGGGcg -5'
23317 3' -61.8 NC_005259.1 + 28353 0.66 0.508876
Target:  5'- --gAGgCCACGGUGcuGGCUGCCCCa- -3'
miRNA:   3'- ccaUUgGGUGCCGCc-CUGGCGGGGcg -5'
23317 3' -61.8 NC_005259.1 + 47321 0.66 0.508876
Target:  5'- -cUGACCgGCGGCcuuGGuCaGCCCCGUg -3'
miRNA:   3'- ccAUUGGgUGCCGc--CCuGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 41213 0.66 0.505968
Target:  5'- cGGUGuggaucgucacGCCCugcuCGGCGGugacGAuccggugcgccucaCCGCCCCGg -3'
miRNA:   3'- -CCAU-----------UGGGu---GCCGCC----CU--------------GGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 13690 0.66 0.499209
Target:  5'- --gGACCCGUGGCcGG-UCGaCCCCGCc -3'
miRNA:   3'- ccaUUGGGUGCCGcCCuGGC-GGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 7838 0.66 0.499209
Target:  5'- cGGUcACCCcuuACGGgacGGACCGCgCCGa -3'
miRNA:   3'- -CCAuUGGG---UGCCgc-CCUGGCGgGGCg -5'
23317 3' -61.8 NC_005259.1 + 44868 0.66 0.499209
Target:  5'- --aGACCgGCGGCGagauccGACgCGCCCCa- -3'
miRNA:   3'- ccaUUGGgUGCCGCc-----CUG-GCGGGGcg -5'
23317 3' -61.8 NC_005259.1 + 10132 0.66 0.499209
Target:  5'- --cAGCCCACGcGCGcGcCCGCCguUCGCa -3'
miRNA:   3'- ccaUUGGGUGC-CGCcCuGGCGG--GGCG- -5'
23317 3' -61.8 NC_005259.1 + 3944 0.66 0.493448
Target:  5'- cGGUcACCUACugGGaCGGGcgauucuggaccugaGCgGUCCCGCg -3'
miRNA:   3'- -CCAuUGGGUG--CC-GCCC---------------UGgCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 19553 0.66 0.489624
Target:  5'- cGUAuGCCCGCaGCcgucGGGACaGCgCCGCa -3'
miRNA:   3'- cCAU-UGGGUGcCG----CCCUGgCGgGGCG- -5'
23317 3' -61.8 NC_005259.1 + 36824 0.66 0.489624
Target:  5'- cGGUgaGACCCACGGuuGuGcacgugcugacGCCGCCCgcUGCg -3'
miRNA:   3'- -CCA--UUGGGUGCCgcC-C-----------UGGCGGG--GCG- -5'
23317 3' -61.8 NC_005259.1 + 35662 0.66 0.489624
Target:  5'- gGGUGGCCagCGCGGUGGuGgugcacagcgacGCCguGCCCgGCg -3'
miRNA:   3'- -CCAUUGG--GUGCCGCC-C------------UGG--CGGGgCG- -5'
23317 3' -61.8 NC_005259.1 + 46282 0.66 0.480126
Target:  5'- aGGUucuGCa-ACaGCGGGGCCGCCguggCUGCg -3'
miRNA:   3'- -CCAu--UGggUGcCGCCCUGGCGG----GGCG- -5'
23317 3' -61.8 NC_005259.1 + 42462 0.66 0.470718
Target:  5'- aGUcGCCgacUACGGCGaGGcCCGgCCCGUa -3'
miRNA:   3'- cCAuUGG---GUGCCGC-CCuGGCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 12016 0.66 0.470718
Target:  5'- cGGUGGCCUuguACGGUGcGGGCgGCaaCCGg -3'
miRNA:   3'- -CCAUUGGG---UGCCGC-CCUGgCGg-GGCg -5'
23317 3' -61.8 NC_005259.1 + 61935 0.66 0.470718
Target:  5'- cGGUcuCUCGC-GCGGGugCcgggGCCaCCGCa -3'
miRNA:   3'- -CCAuuGGGUGcCGCCCugG----CGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 35987 0.66 0.470718
Target:  5'- gGGaAACCgACGGCGaGGCCGgaCUGCa -3'
miRNA:   3'- -CCaUUGGgUGCCGCcCUGGCggGGCG- -5'
23317 3' -61.8 NC_005259.1 + 33879 0.66 0.470718
Target:  5'- cGGUGAgCaCAC-GCGGGaACCaCCCgCGCg -3'
miRNA:   3'- -CCAUUgG-GUGcCGCCC-UGGcGGG-GCG- -5'
23317 3' -61.8 NC_005259.1 + 52199 0.66 0.461405
Target:  5'- --cAACgCACGGCucauGGGcACCGCguUCCGCg -3'
miRNA:   3'- ccaUUGgGUGCCG----CCC-UGGCG--GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.