miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 3' -54 NC_005259.1 + 57761 0.66 0.860107
Target:  5'- gCGAGCcgCGAGcgccuGCUGaaucUGCGCGUCGGa -3'
miRNA:   3'- gGCUCGa-GUUC-----UGGC----ACGCGUAGUCg -5'
23324 3' -54 NC_005259.1 + 65337 0.66 0.851857
Target:  5'- gUCGAGCU----GCUGUGCGCG--GGCa -3'
miRNA:   3'- -GGCUCGAguucUGGCACGCGUagUCG- -5'
23324 3' -54 NC_005259.1 + 31072 0.66 0.851857
Target:  5'- aUCGGGUcggCGAGGuucCCGaGCGCGUCGGg -3'
miRNA:   3'- -GGCUCGa--GUUCU---GGCaCGCGUAGUCg -5'
23324 3' -54 NC_005259.1 + 4767 0.66 0.843383
Target:  5'- gCCGGGCUCAagcAGAUC---CGCAaCGGCg -3'
miRNA:   3'- -GGCUCGAGU---UCUGGcacGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 23406 0.66 0.843383
Target:  5'- gCCGAGCaagaAAGACUcauGgcgGCGCAagCAGCc -3'
miRNA:   3'- -GGCUCGag--UUCUGG---Ca--CGCGUa-GUCG- -5'
23324 3' -54 NC_005259.1 + 17818 0.66 0.838193
Target:  5'- gUGAGCUCAgcgAGGCCaucgacggGUGgGCcgaggccaccccgugGUCAGCg -3'
miRNA:   3'- gGCUCGAGU---UCUGG--------CACgCG---------------UAGUCG- -5'
23324 3' -54 NC_005259.1 + 7646 0.66 0.834691
Target:  5'- gCCGAGUUCGAccGCCGU-CGuCGUgAGCg -3'
miRNA:   3'- -GGCUCGAGUUc-UGGCAcGC-GUAgUCG- -5'
23324 3' -54 NC_005259.1 + 24249 0.66 0.834691
Target:  5'- gCGAGUUCGgcgAGugCGUGCacGCGU-GGCu -3'
miRNA:   3'- gGCUCGAGU---UCugGCACG--CGUAgUCG- -5'
23324 3' -54 NC_005259.1 + 6425 0.66 0.825792
Target:  5'- cCCGAcCUCGccgaugucGGcACCGUcGCGCugAUCGGCa -3'
miRNA:   3'- -GGCUcGAGU--------UC-UGGCA-CGCG--UAGUCG- -5'
23324 3' -54 NC_005259.1 + 11728 0.66 0.825792
Target:  5'- gCGAgGCUCAGaucGAUgGUGCGCAgaCGGUc -3'
miRNA:   3'- gGCU-CGAGUU---CUGgCACGCGUa-GUCG- -5'
23324 3' -54 NC_005259.1 + 45150 0.66 0.824891
Target:  5'- gCUGAucGCUC-AGGCCGcccuuggccuuguUGCGCgccgagGUCAGCg -3'
miRNA:   3'- -GGCU--CGAGuUCUGGC-------------ACGCG------UAGUCG- -5'
23324 3' -54 NC_005259.1 + 50651 0.66 0.823988
Target:  5'- gCCGccCUCGGGGCCauagggcaccaGCGCGUCGGUg -3'
miRNA:   3'- -GGCucGAGUUCUGGca---------CGCGUAGUCG- -5'
23324 3' -54 NC_005259.1 + 58908 0.66 0.823083
Target:  5'- cUCGGGCUCGucGGCgGUcuugucgucggcggGCGCGguggCAGCg -3'
miRNA:   3'- -GGCUCGAGUu-CUGgCA--------------CGCGUa---GUCG- -5'
23324 3' -54 NC_005259.1 + 45605 0.67 0.820356
Target:  5'- aCCGAcaGCUCGgucucgaugcccgccGGGCCGggcaGCGCGcCGGUg -3'
miRNA:   3'- -GGCU--CGAGU---------------UCUGGCa---CGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 13421 0.67 0.816694
Target:  5'- gCCGGGgUCGccgccgGGGCCGcgcuagGCGUgaccGUCGGCg -3'
miRNA:   3'- -GGCUCgAGU------UCUGGCa-----CGCG----UAGUCG- -5'
23324 3' -54 NC_005259.1 + 14201 0.67 0.816694
Target:  5'- cCCGAGCaggcCGGGAucaacuacCCGgcGCGCGUCGuGCg -3'
miRNA:   3'- -GGCUCGa---GUUCU--------GGCa-CGCGUAGU-CG- -5'
23324 3' -54 NC_005259.1 + 8754 0.67 0.807406
Target:  5'- gUCGAGgUCGAGGCCcuuggccaGCGCggCGGUg -3'
miRNA:   3'- -GGCUCgAGUUCUGGca------CGCGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 31892 0.67 0.807406
Target:  5'- gCCGGuCUCAAGGcCCG-GCGCG--AGCg -3'
miRNA:   3'- -GGCUcGAGUUCU-GGCaCGCGUagUCG- -5'
23324 3' -54 NC_005259.1 + 60927 0.67 0.806468
Target:  5'- aUGAGCUCGGccuugguGAUCGUcugcaccacauGCGCGUcCGGCg -3'
miRNA:   3'- gGCUCGAGUU-------CUGGCA-----------CGCGUA-GUCG- -5'
23324 3' -54 NC_005259.1 + 27364 0.67 0.796983
Target:  5'- aUCGGGCUUGGugcccggcacgguGACCGgcgGCGgUGUCGGCa -3'
miRNA:   3'- -GGCUCGAGUU-------------CUGGCa--CGC-GUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.