miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 58762 0.66 0.839946
Target:  5'- cGGCgaACGACGcugcgggcgcugugcGCCGGUCgaGGCGGUGAuuGCc -3'
miRNA:   3'- -UCG--UGCUGU---------------CGGUUAG--CCGCUACU--CG- -5'
23328 3' -54.1 NC_005259.1 + 6380 0.66 0.836433
Target:  5'- gGGCGCGAUGGUCAacGUCauuuucgaGGCGGUGcccugauguGGCc -3'
miRNA:   3'- -UCGUGCUGUCGGU--UAG--------CCGCUAC---------UCG- -5'
23328 3' -54.1 NC_005259.1 + 34445 0.66 0.836433
Target:  5'- gAGCugccgaccgGGCAGCguGUCGcUGAUGAGCa -3'
miRNA:   3'- -UCGug-------CUGUCGguUAGCcGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 5077 0.66 0.81837
Target:  5'- cGGguCGACgGGCCGGUgucacCGGCGAUcuGCg -3'
miRNA:   3'- -UCguGCUG-UCGGUUA-----GCCGCUAcuCG- -5'
23328 3' -54.1 NC_005259.1 + 60569 0.66 0.81837
Target:  5'- uGC-CGACGGUCAGgcggcccaCGGCGAgucGGGUg -3'
miRNA:   3'- uCGuGCUGUCGGUUa-------GCCGCUa--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 50490 0.66 0.81837
Target:  5'- uGCuCGAUgAGCCGGUCgaugugGGCGGUGcGCu -3'
miRNA:   3'- uCGuGCUG-UCGGUUAG------CCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 56362 0.66 0.809042
Target:  5'- gGGCACGcgguACAGCCGucgcgggccgcGUCGGCugaucgucucGAUGGuGCc -3'
miRNA:   3'- -UCGUGC----UGUCGGU-----------UAGCCG----------CUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 68749 0.66 0.809042
Target:  5'- gAGCucgaccccgGCGACcucGCC-AUCGGUGuacuUGAGCa -3'
miRNA:   3'- -UCG---------UGCUGu--CGGuUAGCCGCu---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 27379 0.66 0.809042
Target:  5'- cGGCACGGugaCCGG-CGGCGGUGucGGCa -3'
miRNA:   3'- -UCGUGCUgucGGUUaGCCGCUAC--UCG- -5'
23328 3' -54.1 NC_005259.1 + 67006 0.66 0.809042
Target:  5'- cGCACGACAcGCguGUaggucuUGGCGGUGGuGUa -3'
miRNA:   3'- uCGUGCUGU-CGguUA------GCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 28111 0.66 0.809042
Target:  5'- gGGCcgguCGAUugaccguucguGCCGAcguaGGCGAUGAGCu -3'
miRNA:   3'- -UCGu---GCUGu----------CGGUUag--CCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 26798 0.66 0.809042
Target:  5'- cAGCGCcGCcgcccgguuGGCCGGUacCGGCGGUGGuGCc -3'
miRNA:   3'- -UCGUGcUG---------UCGGUUA--GCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 4121 0.66 0.809042
Target:  5'- cGGCcuCGACguGGCCAagaccGUCGGCGAguucaagGAcGCg -3'
miRNA:   3'- -UCGu-GCUG--UCGGU-----UAGCCGCUa------CU-CG- -5'
23328 3' -54.1 NC_005259.1 + 16653 0.66 0.80526
Target:  5'- cGC-CGACAauuucggggugaccGCCucgauguGGUCGGCGAuccUGGGCa -3'
miRNA:   3'- uCGuGCUGU--------------CGG-------UUAGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 64847 0.66 0.803357
Target:  5'- uGCugGCGAUGGCCAcccugaucgGUCGGagaucuuguccgaguUGAUGAGCc -3'
miRNA:   3'- uCG--UGCUGUCGGU---------UAGCC---------------GCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 24536 0.66 0.799531
Target:  5'- uGGCucGCGuucGCAGUCcaGAUCGGCGGgguguacucgUGGGCa -3'
miRNA:   3'- -UCG--UGC---UGUCGG--UUAGCCGCU----------ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 63552 0.66 0.799531
Target:  5'- uGCuCGGCGGCCAccgacGCGAcGAGCg -3'
miRNA:   3'- uCGuGCUGUCGGUuagc-CGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 66921 0.66 0.799531
Target:  5'- cAGCGCGcGguGCuCGAcCGG-GGUGAGCg -3'
miRNA:   3'- -UCGUGC-UguCG-GUUaGCCgCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 29062 0.67 0.79374
Target:  5'- gAGCGCGguaucggcccgaucuGCGcuGCCAAggccgGGUGGUGAGCu -3'
miRNA:   3'- -UCGUGC---------------UGU--CGGUUag---CCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 42640 0.67 0.790822
Target:  5'- aGGCACcucggccccgaugugGGCGGCCAcgcggcugcuGUUGGCGAUcucgaccccguugaGGGCg -3'
miRNA:   3'- -UCGUG---------------CUGUCGGU----------UAGCCGCUA--------------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.