miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 9534 0.66 0.92216
Target:  5'- cCGCCGGGUcACCGGa---GAGCUGCc -3'
miRNA:   3'- -GCGGUUCGuUGGCUguggCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 30345 0.66 0.92216
Target:  5'- aGCaCGAGCucACCgugugGACGCCGAuCUGCc -3'
miRNA:   3'- gCG-GUUCGu-UGG-----CUGUGGCUuGAUGc -5'
23337 3' -52.4 NC_005259.1 + 52727 0.66 0.92216
Target:  5'- uGUCGAuGUAuGCCGACGCCGGGaucgauCUGCa -3'
miRNA:   3'- gCGGUU-CGU-UGGCUGUGGCUU------GAUGc -5'
23337 3' -52.4 NC_005259.1 + 17023 0.66 0.916088
Target:  5'- cCGCCAuccucGGC-GCUGGCAUCGAcaACcGCGa -3'
miRNA:   3'- -GCGGU-----UCGuUGGCUGUGGCU--UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 29056 0.66 0.916088
Target:  5'- aGCCGcgAGCGcgguAUCGGC-CCGAuCUGCGc -3'
miRNA:   3'- gCGGU--UCGU----UGGCUGuGGCUuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 44161 0.66 0.916088
Target:  5'- gGUCGAGCAGC--GCGCCGGugU-CGg -3'
miRNA:   3'- gCGGUUCGUUGgcUGUGGCUugAuGC- -5'
23337 3' -52.4 NC_005259.1 + 56176 0.66 0.916088
Target:  5'- gGCCAcGguGCCGACAUacgcguugcgCGAGCUGu- -3'
miRNA:   3'- gCGGUuCguUGGCUGUG----------GCUUGAUgc -5'
23337 3' -52.4 NC_005259.1 + 13941 0.66 0.916088
Target:  5'- cCGCCA---AAUCGACGCCGGACc--- -3'
miRNA:   3'- -GCGGUucgUUGGCUGUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 5734 0.66 0.909741
Target:  5'- gGCCAuucucGCGGCCaaGCGgCGAGCUGCc -3'
miRNA:   3'- gCGGUu----CGUUGGc-UGUgGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 53779 0.66 0.909741
Target:  5'- aGCCGuaCGACCGGC-CUGAGCU-CGu -3'
miRNA:   3'- gCGGUucGUUGGCUGuGGCUUGAuGC- -5'
23337 3' -52.4 NC_005259.1 + 48442 0.66 0.905803
Target:  5'- gCGCgAGGCAgcggcagcgcguuccACCGcGCGCCGggUcGCGu -3'
miRNA:   3'- -GCGgUUCGU---------------UGGC-UGUGGCuuGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 15149 0.66 0.903123
Target:  5'- gGCCAccucGGUGGCCGAgGCCGAGg---- -3'
miRNA:   3'- gCGGU----UCGUUGGCUgUGGCUUgaugc -5'
23337 3' -52.4 NC_005259.1 + 42563 0.66 0.903123
Target:  5'- uCGgCGAGCAGCCGGucguCAUCGAuagGCGu -3'
miRNA:   3'- -GCgGUUCGUUGGCU----GUGGCUugaUGC- -5'
23337 3' -52.4 NC_005259.1 + 35865 0.66 0.903123
Target:  5'- cCGCCGcguccaccGCAGCCGcCGCCGAggcagACcACGg -3'
miRNA:   3'- -GCGGUu-------CGUUGGCuGUGGCU-----UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 21279 0.66 0.903123
Target:  5'- gGCCugacGAGCAgGCCGAUgagGCCGAACg--- -3'
miRNA:   3'- gCGG----UUCGU-UGGCUG---UGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 62619 0.66 0.903123
Target:  5'- aCGCCGcaccGUGGCCaGCACCGcAUUGCGu -3'
miRNA:   3'- -GCGGUu---CGUUGGcUGUGGCuUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 34495 0.66 0.903123
Target:  5'- cCGCCGAcGCGACgaCGAUgucGCCGAcAUUGCGc -3'
miRNA:   3'- -GCGGUU-CGUUG--GCUG---UGGCU-UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 65426 0.66 0.903123
Target:  5'- gGCCAAGCGAU-GGC-CUGAGCUcGCa -3'
miRNA:   3'- gCGGUUCGUUGgCUGuGGCUUGA-UGc -5'
23337 3' -52.4 NC_005259.1 + 44532 0.66 0.903123
Target:  5'- cCGCCcGGCAguccacucauGCCGAgACCGGcagGCaGCGc -3'
miRNA:   3'- -GCGGuUCGU----------UGGCUgUGGCU---UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 20290 0.66 0.903123
Target:  5'- gCGCUAccGCGAguuCUGGuCGCCGAGCUACu -3'
miRNA:   3'- -GCGGUu-CGUU---GGCU-GUGGCUUGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.