Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 9534 | 0.66 | 0.92216 |
Target: 5'- cCGCCGGGUcACCGGa---GAGCUGCc -3' miRNA: 3'- -GCGGUUCGuUGGCUguggCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 30345 | 0.66 | 0.92216 |
Target: 5'- aGCaCGAGCucACCgugugGACGCCGAuCUGCc -3' miRNA: 3'- gCG-GUUCGu-UGG-----CUGUGGCUuGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 52727 | 0.66 | 0.92216 |
Target: 5'- uGUCGAuGUAuGCCGACGCCGGGaucgauCUGCa -3' miRNA: 3'- gCGGUU-CGU-UGGCUGUGGCUU------GAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 56176 | 0.66 | 0.916088 |
Target: 5'- gGCCAcGguGCCGACAUacgcguugcgCGAGCUGu- -3' miRNA: 3'- gCGGUuCguUGGCUGUG----------GCUUGAUgc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 44161 | 0.66 | 0.916088 |
Target: 5'- gGUCGAGCAGC--GCGCCGGugU-CGg -3' miRNA: 3'- gCGGUUCGUUGgcUGUGGCUugAuGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 29056 | 0.66 | 0.916088 |
Target: 5'- aGCCGcgAGCGcgguAUCGGC-CCGAuCUGCGc -3' miRNA: 3'- gCGGU--UCGU----UGGCUGuGGCUuGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 17023 | 0.66 | 0.916088 |
Target: 5'- cCGCCAuccucGGC-GCUGGCAUCGAcaACcGCGa -3' miRNA: 3'- -GCGGU-----UCGuUGGCUGUGGCU--UGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 13941 | 0.66 | 0.916088 |
Target: 5'- cCGCCA---AAUCGACGCCGGACc--- -3' miRNA: 3'- -GCGGUucgUUGGCUGUGGCUUGaugc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 5734 | 0.66 | 0.909741 |
Target: 5'- gGCCAuucucGCGGCCaaGCGgCGAGCUGCc -3' miRNA: 3'- gCGGUu----CGUUGGc-UGUgGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 53779 | 0.66 | 0.909741 |
Target: 5'- aGCCGuaCGACCGGC-CUGAGCU-CGu -3' miRNA: 3'- gCGGUucGUUGGCUGuGGCUUGAuGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 48442 | 0.66 | 0.905803 |
Target: 5'- gCGCgAGGCAgcggcagcgcguuccACCGcGCGCCGggUcGCGu -3' miRNA: 3'- -GCGgUUCGU---------------UGGC-UGUGGCuuGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 50992 | 0.66 | 0.903123 |
Target: 5'- uGUCGAGUcACCGGCgaaaaACCGGACgUugGu -3' miRNA: 3'- gCGGUUCGuUGGCUG-----UGGCUUG-AugC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 62619 | 0.66 | 0.903123 |
Target: 5'- aCGCCGcaccGUGGCCaGCACCGcAUUGCGu -3' miRNA: 3'- -GCGGUu---CGUUGGcUGUGGCuUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 21279 | 0.66 | 0.903123 |
Target: 5'- gGCCugacGAGCAgGCCGAUgagGCCGAACg--- -3' miRNA: 3'- gCGG----UUCGU-UGGCUG---UGGCUUGaugc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 35865 | 0.66 | 0.903123 |
Target: 5'- cCGCCGcguccaccGCAGCCGcCGCCGAggcagACcACGg -3' miRNA: 3'- -GCGGUu-------CGUUGGCuGUGGCU-----UGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 15149 | 0.66 | 0.903123 |
Target: 5'- gGCCAccucGGUGGCCGAgGCCGAGg---- -3' miRNA: 3'- gCGGU----UCGUUGGCUgUGGCUUgaugc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 42563 | 0.66 | 0.903123 |
Target: 5'- uCGgCGAGCAGCCGGucguCAUCGAuagGCGu -3' miRNA: 3'- -GCgGUUCGUUGGCU----GUGGCUugaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 34495 | 0.66 | 0.903123 |
Target: 5'- cCGCCGAcGCGACgaCGAUgucGCCGAcAUUGCGc -3' miRNA: 3'- -GCGGUU-CGUUG--GCUG---UGGCU-UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 65426 | 0.66 | 0.903123 |
Target: 5'- gGCCAAGCGAU-GGC-CUGAGCUcGCa -3' miRNA: 3'- gCGGUUCGUUGgCUGuGGCUUGA-UGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 44532 | 0.66 | 0.903123 |
Target: 5'- cCGCCcGGCAguccacucauGCCGAgACCGGcagGCaGCGc -3' miRNA: 3'- -GCGGuUCGU----------UGGCUgUGGCU---UGaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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