miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 26385 0.72 0.592501
Target:  5'- aGCCuguugcucGCGAuuCCGACGCCGGGCgcgGCGg -3'
miRNA:   3'- gCGGuu------CGUU--GGCUGUGGCUUGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 7190 0.72 0.603441
Target:  5'- uGCCcGGCcuGCgGacGCACCGGGCUGCGg -3'
miRNA:   3'- gCGGuUCGu-UGgC--UGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 15584 0.72 0.603441
Target:  5'- gGCCAGcGCGACgGGcCGCaUGAGCUACGg -3'
miRNA:   3'- gCGGUU-CGUUGgCU-GUG-GCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 43468 0.71 0.63637
Target:  5'- uCGUUGAGCAACCGGCcCUGAGCgucgaACGc -3'
miRNA:   3'- -GCGGUUCGUUGGCUGuGGCUUGa----UGC- -5'
23337 3' -52.4 NC_005259.1 + 65988 0.71 0.646254
Target:  5'- gCGCCGAGCAGCCGcucgacguggugcGCACCcucgGGGCcGCa -3'
miRNA:   3'- -GCGGUUCGUUGGC-------------UGUGG----CUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 26070 0.71 0.647352
Target:  5'- cCGCCGAGCAgucccccgagGCCGcCGCCGAGaagACc -3'
miRNA:   3'- -GCGGUUCGU----------UGGCuGUGGCUUga-UGc -5'
23337 3' -52.4 NC_005259.1 + 12234 0.71 0.65832
Target:  5'- gGCCGGGCAAUgGucACACCGc-CUGCGa -3'
miRNA:   3'- gCGGUUCGUUGgC--UGUGGCuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 58970 0.71 0.66817
Target:  5'- gGUCGGGCAGCucgucggCGACGgCGAGCUugGc -3'
miRNA:   3'- gCGGUUCGUUG-------GCUGUgGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 14544 0.71 0.669263
Target:  5'- uGCCGAGUucguCCGGCagGCCGAGCggggaccgGCGa -3'
miRNA:   3'- gCGGUUCGuu--GGCUG--UGGCUUGa-------UGC- -5'
23337 3' -52.4 NC_005259.1 + 18311 0.71 0.669263
Target:  5'- uGCCcGGUGugCGACACCGAggccGgUGCGu -3'
miRNA:   3'- gCGGuUCGUugGCUGUGGCU----UgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 27279 0.71 0.669263
Target:  5'- cCGCCuuGAGCcGCCGcugcacGCGCCGGAC-ACGg -3'
miRNA:   3'- -GCGG--UUCGuUGGC------UGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 50404 0.71 0.679083
Target:  5'- uCGCCGAGCGcgccggugccuugACCGGC-UCGGGCaGCGg -3'
miRNA:   3'- -GCGGUUCGU-------------UGGCUGuGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 26616 0.71 0.680172
Target:  5'- gCGCCGgaccGGUAGCCGAUAUCGAugGCcugGCGu -3'
miRNA:   3'- -GCGGU----UCGUUGGCUGUGGCU--UGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 35982 0.71 0.680172
Target:  5'- aCGgCGGGaAACCGACggcgagGCCGGACUGCa -3'
miRNA:   3'- -GCgGUUCgUUGGCUG------UGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 43783 0.7 0.691036
Target:  5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5'
23337 3' -52.4 NC_005259.1 + 63427 0.7 0.691036
Target:  5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3'
miRNA:   3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5'
23337 3' -52.4 NC_005259.1 + 42517 0.7 0.698607
Target:  5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3'
miRNA:   3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5'
23337 3' -52.4 NC_005259.1 + 66246 0.7 0.701842
Target:  5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3'
miRNA:   3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 17350 0.7 0.701842
Target:  5'- uCGCCGucgaggucGGCGGCuCGGCGCUGGucguggucgACUGCGa -3'
miRNA:   3'- -GCGGU--------UCGUUG-GCUGUGGCU---------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 33609 0.7 0.712581
Target:  5'- gGUCGAgcuGCAACCGGcCACCGAAacugUUGCGa -3'
miRNA:   3'- gCGGUU---CGUUGGCU-GUGGCUU----GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.