miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 5' -59.1 NC_005259.1 + 47944 0.66 0.64057
Target:  5'- gCCGaugaCGGCGGuGCCGAuGGCCGcCGc-- -3'
miRNA:   3'- -GGCa---GCUGCC-CGGCU-CCGGCuGUucu -5'
23340 5' -59.1 NC_005259.1 + 8751 0.66 0.64057
Target:  5'- cCCGUCGA--GGUCGAGGCCcuuGGCcAGc -3'
miRNA:   3'- -GGCAGCUgcCCGGCUCCGG---CUGuUCu -5'
23340 5' -59.1 NC_005259.1 + 14551 0.66 0.64057
Target:  5'- uUCGUcCGGCaGGCCGAgcggGGaCCGGCGAa- -3'
miRNA:   3'- -GGCA-GCUGcCCGGCU----CC-GGCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 23326 0.66 0.619814
Target:  5'- gUCGcCGAgccggauuacauCGGGCuCGAGGCUGccuGCGAGGc -3'
miRNA:   3'- -GGCaGCU------------GCCCG-GCUCCGGC---UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 37606 0.66 0.619814
Target:  5'- ---aCGuCGGGCCGAGcucGCUGAUggGGa -3'
miRNA:   3'- ggcaGCuGCCCGGCUC---CGGCUGuuCU- -5'
23340 5' -59.1 NC_005259.1 + 51411 0.66 0.613592
Target:  5'- aUCGcCGAgGGGCCGguugaggucuugggcGGGCC-ACGGGGc -3'
miRNA:   3'- -GGCaGCUgCCCGGC---------------UCCGGcUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 26817 0.66 0.609446
Target:  5'- gCCGguacCGGCGGugguGCCGGGGCgGucugcucggGCAGGAu -3'
miRNA:   3'- -GGCa---GCUGCC----CGGCUCCGgC---------UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 51796 0.66 0.60841
Target:  5'- gCGcUCGGCGGGUCGgucagcucaggcaGGGCgGGCAGa- -3'
miRNA:   3'- gGC-AGCUGCCCGGC-------------UCCGgCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 58929 0.66 0.598062
Target:  5'- gUCGUCGGCGGGCgcgguggcagcguCGGccuuGGCCaGCAGGu -3'
miRNA:   3'- -GGCAGCUGCCCG-------------GCU----CCGGcUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 5895 0.67 0.588771
Target:  5'- gCCGUCGACcacGUCGAGGUCGAgGu-- -3'
miRNA:   3'- -GGCAGCUGcc-CGGCUCCGGCUgUucu -5'
23340 5' -59.1 NC_005259.1 + 22245 0.67 0.582591
Target:  5'- uCCGUCGACgcauucucuGGgacgaggugcaucacGCCGGGGCCGAgGGu- -3'
miRNA:   3'- -GGCAGCUG---------CC---------------CGGCUCCGGCUgUUcu -5'
23340 5' -59.1 NC_005259.1 + 55124 0.67 0.578478
Target:  5'- aCCGgcuGcCGuGCCGAgcaGGCCGACAAGGu -3'
miRNA:   3'- -GGCag-CuGCcCGGCU---CCGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 52248 0.67 0.578478
Target:  5'- aCCGccCGGCcccucucagggGGGCCG-GGCaGACAGGAc -3'
miRNA:   3'- -GGCa-GCUG-----------CCCGGCuCCGgCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 53030 0.67 0.576424
Target:  5'- gCGUCGaggcaucgugaccucGCGGGaaauugcugcgugaCGGGGuuGACAAGAc -3'
miRNA:   3'- gGCAGC---------------UGCCCg-------------GCUCCggCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 39093 0.67 0.562095
Target:  5'- uCCGUUGAgCGGGuuGAGGUgcugcaaucgcgucaCGACAu-- -3'
miRNA:   3'- -GGCAGCU-GCCCggCUCCG---------------GCUGUucu -5'
23340 5' -59.1 NC_005259.1 + 22991 0.67 0.558018
Target:  5'- gUGUCGACGccGCCGAGGUCacCGAGGa -3'
miRNA:   3'- gGCAGCUGCc-CGGCUCCGGcuGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 49566 0.67 0.558018
Target:  5'- uUCGUCGGuCGuGGCCaGAccGGCgGGCGGGGu -3'
miRNA:   3'- -GGCAGCU-GC-CCGG-CU--CCGgCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 7328 0.67 0.558018
Target:  5'- gCCGUCGcCGaguacGUCGAGGCCGGacAGAc -3'
miRNA:   3'- -GGCAGCuGCc----CGGCUCCGGCUguUCU- -5'
23340 5' -59.1 NC_005259.1 + 19711 0.67 0.547864
Target:  5'- aCGUUGGCugccGCCGAGGUgauCGACGGGGa -3'
miRNA:   3'- gGCAGCUGcc--CGGCUCCG---GCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 14232 0.67 0.547864
Target:  5'- gCGUCGugcguauCGGGCCG-GGCaaCGACGAc- -3'
miRNA:   3'- gGCAGCu------GCCCGGCuCCG--GCUGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.