Results 1 - 20 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23342 | 3' | -55 | NC_005259.1 | + | 3490 | 0.65 | 0.797933 |
Target: 5'- ----aCACCCUGCC-UCAcGCGACCAUg -3' miRNA: 3'- gaucaGUGGGGCGGuGGU-UGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 33308 | 0.65 | 0.797933 |
Target: 5'- -cGGcUCgAUCCCGCCGUCGGCggUCACg -3' miRNA: 3'- gaUC-AG-UGGGGCGGUGGUUGuuGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 68465 | 0.66 | 0.788255 |
Target: 5'- uUGGUCACCgCCGUgACgCGACcuuuGACcCACg -3' miRNA: 3'- gAUCAGUGG-GGCGgUG-GUUG----UUG-GUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 9127 | 0.66 | 0.788255 |
Target: 5'- ----gCGCCCCGgUACgGGCAGCCGu -3' miRNA: 3'- gaucaGUGGGGCgGUGgUUGUUGGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 29458 | 0.66 | 0.788255 |
Target: 5'- --cGUgACCuuGCCGCCcggcucggcAugGACCGCc -3' miRNA: 3'- gauCAgUGGggCGGUGG---------UugUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 46753 | 0.66 | 0.788255 |
Target: 5'- aUGG-CugCgCCGacaccugCGCCGACAGCCGCg -3' miRNA: 3'- gAUCaGugG-GGCg------GUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 14315 | 0.66 | 0.788255 |
Target: 5'- aUGGcCGCCCucgaCGCCGCCGcccGCGugcggGCCGCc -3' miRNA: 3'- gAUCaGUGGG----GCGGUGGU---UGU-----UGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 41688 | 0.66 | 0.788255 |
Target: 5'- gUGGcCACCgCGCaCACaggcauGCAGCCGCc -3' miRNA: 3'- gAUCaGUGGgGCG-GUGgu----UGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 53228 | 0.66 | 0.787278 |
Target: 5'- ----gCGCCCugcuugagguucgCGCCGCCGACAccgucGCCGCc -3' miRNA: 3'- gaucaGUGGG-------------GCGGUGGUUGU-----UGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 1914 | 0.66 | 0.787278 |
Target: 5'- -gAGgaagCGCgCCGCCccaaaauGCCGACGGuCCACa -3' miRNA: 3'- gaUCa---GUGgGGCGG-------UGGUUGUU-GGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 23434 | 0.66 | 0.778417 |
Target: 5'- -aAG-CAgCCCGCCACCGcCAAgCAg -3' miRNA: 3'- gaUCaGUgGGGCGGUGGUuGUUgGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 40868 | 0.66 | 0.778417 |
Target: 5'- aUGGcCGCCCacaGCuCACCGGCcACCGu -3' miRNA: 3'- gAUCaGUGGGg--CG-GUGGUUGuUGGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 14694 | 0.66 | 0.778417 |
Target: 5'- uCUGcUCGacCCCCGCCGCgacgaaCAGCAcGCCGCg -3' miRNA: 3'- -GAUcAGU--GGGGCGGUG------GUUGU-UGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 38948 | 0.66 | 0.778417 |
Target: 5'- -cGGU-GCCgCUGCCGCCGAgAGCCuGCa -3' miRNA: 3'- gaUCAgUGG-GGCGGUGGUUgUUGG-UG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 42821 | 0.66 | 0.778417 |
Target: 5'- gUGGUauuGCUgCCGCCGCCGA-AACCGCc -3' miRNA: 3'- gAUCAg--UGG-GGCGGUGGUUgUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 47963 | 0.66 | 0.778417 |
Target: 5'- aUGGcCGCCgCGCCGCCcGCGaauauGCCGg -3' miRNA: 3'- gAUCaGUGGgGCGGUGGuUGU-----UGGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 42638 | 0.66 | 0.778417 |
Target: 5'- gUAGgCACCUCgGCC-CCGauguggGCGGCCACg -3' miRNA: 3'- gAUCaGUGGGG-CGGuGGU------UGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 1516 | 0.66 | 0.778417 |
Target: 5'- ---cUCACgCUGUCACUGACGAUCACc -3' miRNA: 3'- gaucAGUGgGGCGGUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 55274 | 0.66 | 0.777425 |
Target: 5'- gCUAGUCACCUgucccucaaUugagggacguuugGCCGCgugCGACGACCACa -3' miRNA: 3'- -GAUCAGUGGG---------G-------------CGGUG---GUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 13020 | 0.66 | 0.76843 |
Target: 5'- --cGcCGCCCgGCC-CCAGCAcGCCAa -3' miRNA: 3'- gauCaGUGGGgCGGuGGUUGU-UGGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home