miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 5' -56 NC_005259.1 + 64594 0.66 0.78469
Target:  5'- aGCACACCaacgaggugacugaCGGCGAgCGCGACgGGc -3'
miRNA:   3'- gCGUGUGGag------------GCUGUUgGUGCUGgCU- -5'
23351 5' -56 NC_005259.1 + 53355 0.66 0.78373
Target:  5'- uCGCGCccGCCU-CGACGGCUAa-ACCGAg -3'
miRNA:   3'- -GCGUG--UGGAgGCUGUUGGUgcUGGCU- -5'
23351 5' -56 NC_005259.1 + 21234 0.66 0.78373
Target:  5'- aGUACGCCU-CGGCAGCgCGCGGguuCUGGa -3'
miRNA:   3'- gCGUGUGGAgGCUGUUG-GUGCU---GGCU- -5'
23351 5' -56 NC_005259.1 + 27524 0.66 0.78373
Target:  5'- cCGCACACg-CCGuCGAggccCCACGGCgGGa -3'
miRNA:   3'- -GCGUGUGgaGGCuGUU----GGUGCUGgCU- -5'
23351 5' -56 NC_005259.1 + 67717 0.66 0.78373
Target:  5'- gGCAUACCcgucagccucgaUCCGAUAcCgGCGGCCa- -3'
miRNA:   3'- gCGUGUGG------------AGGCUGUuGgUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 14508 0.66 0.780842
Target:  5'- cCGCAUGCacaCCGGCGAgCACGcggugcguuucgguGCCGAg -3'
miRNA:   3'- -GCGUGUGga-GGCUGUUgGUGC--------------UGGCU- -5'
23351 5' -56 NC_005259.1 + 59384 0.66 0.774053
Target:  5'- cCGCACcguGCCUCCGcgcGCGAgCGUGACCu- -3'
miRNA:   3'- -GCGUG---UGGAGGC---UGUUgGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 5878 0.66 0.774053
Target:  5'- aGCACAUCaacgaucaugCCGuCGACCACG-UCGAg -3'
miRNA:   3'- gCGUGUGGa---------GGCuGUUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 15028 0.66 0.774053
Target:  5'- uCGaCAguCCgaucuaCCGGCAggguGCCAUGGCCGAu -3'
miRNA:   3'- -GC-GUguGGa-----GGCUGU----UGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 60180 0.66 0.774053
Target:  5'- gGCgaACGCCUgcucgaCCGACcgGGCCACGaucucGCCGAu -3'
miRNA:   3'- gCG--UGUGGA------GGCUG--UUGGUGC-----UGGCU- -5'
23351 5' -56 NC_005259.1 + 15149 0.66 0.774053
Target:  5'- gGC-CACCUCgGugG-CCGaGGCCGAg -3'
miRNA:   3'- gCGuGUGGAGgCugUuGGUgCUGGCU- -5'
23351 5' -56 NC_005259.1 + 24641 0.66 0.764238
Target:  5'- -cCGCACC-CCGACGACgA-GACUGAc -3'
miRNA:   3'- gcGUGUGGaGGCUGUUGgUgCUGGCU- -5'
23351 5' -56 NC_005259.1 + 38731 0.66 0.763249
Target:  5'- uGC-CGCCguaCCGGCGguggcccGCCGCaGGCCGGu -3'
miRNA:   3'- gCGuGUGGa--GGCUGU-------UGGUG-CUGGCU- -5'
23351 5' -56 NC_005259.1 + 18479 0.66 0.754294
Target:  5'- cCGUGC-CCgacgCCGACgAGCUACG-CCGAc -3'
miRNA:   3'- -GCGUGuGGa---GGCUG-UUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 23790 0.66 0.754294
Target:  5'- aCGCACGaaaC-CCaACAACCACGACaggaGAc -3'
miRNA:   3'- -GCGUGUg--GaGGcUGUUGGUGCUGg---CU- -5'
23351 5' -56 NC_005259.1 + 18264 0.66 0.754294
Target:  5'- cCGCGCcugaACCUgaGACGACCucgACGcCCGAc -3'
miRNA:   3'- -GCGUG----UGGAggCUGUUGG---UGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 66995 0.66 0.744234
Target:  5'- uGUACGCCUCaCGcACGACaCGCGugUa- -3'
miRNA:   3'- gCGUGUGGAG-GC-UGUUG-GUGCugGcu -5'
23351 5' -56 NC_005259.1 + 40339 0.66 0.744234
Target:  5'- cCGgACACCUCgcgccuCGAUgaugAACCGCG-CCGAg -3'
miRNA:   3'- -GCgUGUGGAG------GCUG----UUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 52903 0.66 0.734068
Target:  5'- aCGgGCACCUgCUcACGACCGcCGACuCGAu -3'
miRNA:   3'- -GCgUGUGGA-GGcUGUUGGU-GCUG-GCU- -5'
23351 5' -56 NC_005259.1 + 51556 0.66 0.734068
Target:  5'- uGCACgacguugggGCCaacgaUCCGGCAGCCGguGCCGAc -3'
miRNA:   3'- gCGUG---------UGG-----AGGCUGUUGGUgcUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.