miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23357 3' -58.4 NC_005259.1 + 58929 0.66 0.66319
Target:  5'- gUCGuCGGCGGGCgcGGUGgcaGCgUCGG-CCu -3'
miRNA:   3'- -GGC-GUCGCCCG--UCAUg--UGgAGCCuGG- -5'
23357 3' -58.4 NC_005259.1 + 41502 0.66 0.66319
Target:  5'- gCgGUGGCGGGCAG---ACCgUGGAUCu -3'
miRNA:   3'- -GgCGUCGCCCGUCaugUGGaGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 66600 0.66 0.66319
Target:  5'- gCCGCAuccaugcagguGgGGGCGGUAUuUCUCGucccuGGCCa -3'
miRNA:   3'- -GGCGU-----------CgCCCGUCAUGuGGAGC-----CUGG- -5'
23357 3' -58.4 NC_005259.1 + 18779 0.66 0.652723
Target:  5'- aUCGCGGUGGGCaagcGGUggcagggacgccGCACCcUCaaGACCa -3'
miRNA:   3'- -GGCGUCGCCCG----UCA------------UGUGG-AGc-CUGG- -5'
23357 3' -58.4 NC_005259.1 + 58334 0.66 0.652723
Target:  5'- -gGCAGCGagaucaGGuCGGUG-GCCUCGGGCa -3'
miRNA:   3'- ggCGUCGC------CC-GUCAUgUGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 23613 0.66 0.652723
Target:  5'- cCCGCguGGC-GGCAGccagACGgCUCGGugUg -3'
miRNA:   3'- -GGCG--UCGcCCGUCa---UGUgGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 65259 0.66 0.652723
Target:  5'- uUCGCAGCcaaGGGCgagggugugugGGUGCugCcgUGGAUCu -3'
miRNA:   3'- -GGCGUCG---CCCG-----------UCAUGugGa-GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 24793 0.66 0.642239
Target:  5'- gCGCAGCaGGGCcaagaccgaGGUGC-CC-CGGcacGCCg -3'
miRNA:   3'- gGCGUCG-CCCG---------UCAUGuGGaGCC---UGG- -5'
23357 3' -58.4 NC_005259.1 + 40456 0.66 0.642239
Target:  5'- gCCGguGUGGuuGacGUACugC-CGGGCCg -3'
miRNA:   3'- -GGCguCGCCcgU--CAUGugGaGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 50058 0.66 0.642239
Target:  5'- cCCGCAcGCgaaacGGGguGUAgACCUgCGGcagcucGCCg -3'
miRNA:   3'- -GGCGU-CG-----CCCguCAUgUGGA-GCC------UGG- -5'
23357 3' -58.4 NC_005259.1 + 32512 0.66 0.631746
Target:  5'- aCCGUgagguagucgaGGCGGGCGGcaggcUugACCUUGcuguuGGCCg -3'
miRNA:   3'- -GGCG-----------UCGCCCGUC-----AugUGGAGC-----CUGG- -5'
23357 3' -58.4 NC_005259.1 + 57521 0.66 0.631746
Target:  5'- aCCGCAGCGcuugccgacGGCGaugGCGuCCUCGGugaacauCCg -3'
miRNA:   3'- -GGCGUCGC---------CCGUca-UGU-GGAGCCu------GG- -5'
23357 3' -58.4 NC_005259.1 + 51038 0.66 0.621254
Target:  5'- -aGCGGCGGGCAcGcGCcauCCUUGaACCa -3'
miRNA:   3'- ggCGUCGCCCGU-CaUGu--GGAGCcUGG- -5'
23357 3' -58.4 NC_005259.1 + 66254 0.66 0.61077
Target:  5'- aCGCAGCGcGGCcc-GCGCCgggCGGcggcucacGCCg -3'
miRNA:   3'- gGCGUCGC-CCGucaUGUGGa--GCC--------UGG- -5'
23357 3' -58.4 NC_005259.1 + 60507 0.67 0.600303
Target:  5'- gCCGguGUugucGUAGUGCGCCauggcCGGGCCg -3'
miRNA:   3'- -GGCguCGcc--CGUCAUGUGGa----GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 45626 0.67 0.600303
Target:  5'- cCCGCcgGGcCGGGCAGcGCGCC--GGugCc -3'
miRNA:   3'- -GGCG--UC-GCCCGUCaUGUGGagCCugG- -5'
23357 3' -58.4 NC_005259.1 + 46400 0.67 0.594035
Target:  5'- gCGCGGUgagggcaucgaaaccGGGCuGUGCACC-CGuGACg -3'
miRNA:   3'- gGCGUCG---------------CCCGuCAUGUGGaGC-CUGg -5'
23357 3' -58.4 NC_005259.1 + 13312 0.67 0.589861
Target:  5'- gUGCGGCGGG--GUAUAUCUUGGuaACCc -3'
miRNA:   3'- gGCGUCGCCCguCAUGUGGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 67234 0.67 0.579452
Target:  5'- aCCaCGGCGGuGUAGggguugagcgGgGCCUCGGGCa -3'
miRNA:   3'- -GGcGUCGCC-CGUCa---------UgUGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 13207 0.67 0.579452
Target:  5'- gCaCAGCGGggccaGCGGUGgGCCUC-GACCg -3'
miRNA:   3'- gGcGUCGCC-----CGUCAUgUGGAGcCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.