miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23384 3' -57.7 NC_005259.1 + 43955 0.66 0.671953
Target:  5'- gGCGaugggCGGGGCCGCCGccugaccgagggcgGUgCCGAUGg -3'
miRNA:   3'- -CGCga---GUUCCGGCGGC--------------UAgGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 20409 0.66 0.664532
Target:  5'- aGgGCaUCGAGGUCuacCCGGUCaCCGACGc -3'
miRNA:   3'- -CgCG-AGUUCCGGc--GGCUAG-GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 22219 0.66 0.664532
Target:  5'- cGCGCaccgccgCGAGGCUGUCGGUUuccgUCGACGc -3'
miRNA:   3'- -CGCGa------GUUCCGGCGGCUAG----GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 62865 0.66 0.653906
Target:  5'- cCGCUCGgcgcgagguAGGCCGCuCGGUCauugagCGACGc -3'
miRNA:   3'- cGCGAGU---------UCCGGCG-GCUAGg-----GUUGCa -5'
23384 3' -57.7 NC_005259.1 + 60549 0.66 0.653906
Target:  5'- cCGCUCGucGGCaUGcCCGGUgCCGACGg -3'
miRNA:   3'- cGCGAGUu-CCG-GC-GGCUAgGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 63689 0.66 0.653906
Target:  5'- cGCGC-CGGGGaucugCGCCug-CCCAGCGg -3'
miRNA:   3'- -CGCGaGUUCCg----GCGGcuaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 63550 0.66 0.643262
Target:  5'- gGUGCUCGGcGGCCaCCGA-CgCGACGa -3'
miRNA:   3'- -CGCGAGUU-CCGGcGGCUaGgGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 63217 0.66 0.642197
Target:  5'- cCGCcucgucagacagaUCGGGGUCGCUGGUcagaCCCGACGc -3'
miRNA:   3'- cGCG-------------AGUUCCGGCGGCUA----GGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 23346 0.66 0.632608
Target:  5'- cGgGCUCGAGGCUGCCugcGAggCCGcCGa -3'
miRNA:   3'- -CgCGAGUUCCGGCGG---CUagGGUuGCa -5'
23384 3' -57.7 NC_005259.1 + 14339 0.66 0.631543
Target:  5'- cGCGUgc-GGGCCGCCGAcgCCAucaacucACGUg -3'
miRNA:   3'- -CGCGaguUCCGGCGGCUagGGU-------UGCA- -5'
23384 3' -57.7 NC_005259.1 + 23881 0.66 0.631543
Target:  5'- uGCGCUauccgcugccgccCGA-GCCGCCGcgCCCGcCGUc -3'
miRNA:   3'- -CGCGA-------------GUUcCGGCGGCuaGGGUuGCA- -5'
23384 3' -57.7 NC_005259.1 + 24792 0.66 0.621954
Target:  5'- uGCGCagCAGGGCCaagaCCGAggugcCCCGGCa- -3'
miRNA:   3'- -CGCGa-GUUCCGGc---GGCUa----GGGUUGca -5'
23384 3' -57.7 NC_005259.1 + 45314 0.66 0.621954
Target:  5'- aCGC-CGAGGCCGCCG--CCgAacuGCGUg -3'
miRNA:   3'- cGCGaGUUCCGGCGGCuaGGgU---UGCA- -5'
23384 3' -57.7 NC_005259.1 + 43084 0.67 0.611308
Target:  5'- -aGCcCGuuGCCGCCGAacagUCCCGugGUc -3'
miRNA:   3'- cgCGaGUucCGGCGGCU----AGGGUugCA- -5'
23384 3' -57.7 NC_005259.1 + 23732 0.67 0.60068
Target:  5'- gGUGCUCAcguGGGaCGgCGAcCCCGACGc -3'
miRNA:   3'- -CGCGAGU---UCCgGCgGCUaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 60073 0.67 0.590076
Target:  5'- -gGCUCGGgcGGCuCGCCGAcuuUCUCGAUGg -3'
miRNA:   3'- cgCGAGUU--CCG-GCGGCU---AGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 63851 0.67 0.590076
Target:  5'- aGCGCguaccggCGAGGUgGCCGGcuggCCUuGCGUg -3'
miRNA:   3'- -CGCGa------GUUCCGgCGGCUa---GGGuUGCA- -5'
23384 3' -57.7 NC_005259.1 + 25095 0.67 0.590076
Target:  5'- uGCGCccgccccgagCAAGGgcaaggucgaccCCGCCGAccucCCCGACGUg -3'
miRNA:   3'- -CGCGa---------GUUCC------------GGCGGCUa---GGGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 50653 0.67 0.583729
Target:  5'- cGCcCUCGGGGCCauagggcaccagcgcGUCGGUgCCGACGa -3'
miRNA:   3'- -CGcGAGUUCCGG---------------CGGCUAgGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 28630 0.67 0.568976
Target:  5'- -gGC-CAAGGCCaCCGGUgCCGACa- -3'
miRNA:   3'- cgCGaGUUCCGGcGGCUAgGGUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.