miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 26498 0.66 0.623128
Target:  5'- cGCCGcGAgcuCG-CCGCCcGGCGAGaaGAg -3'
miRNA:   3'- -CGGCuCU---GCuGGCGGuUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 8649 0.66 0.623128
Target:  5'- gGCaCGAGGCuguggucgGGCUGCCAcGCGGGCaaCGGg -3'
miRNA:   3'- -CG-GCUCUG--------CUGGCGGUuCGCUCG--GCU- -5'
23386 5' -59 NC_005259.1 + 8704 0.66 0.623128
Target:  5'- uGUCGAGGuCGucGCgGUCAAGCGuGUCGGu -3'
miRNA:   3'- -CGGCUCU-GC--UGgCGGUUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 33912 0.66 0.623128
Target:  5'- gGCCGAGAcCGGCCaCgGuGCGAGCa-- -3'
miRNA:   3'- -CGGCUCU-GCUGGcGgUuCGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 9156 0.66 0.612649
Target:  5'- cCCGucGACGGCaUGCCGguGGC-AGCCGAu -3'
miRNA:   3'- cGGCu-CUGCUG-GCGGU--UCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 29679 0.66 0.612649
Target:  5'- uGCCG-GACGcGCCGCaauCGAGacCGAuGCCGAg -3'
miRNA:   3'- -CGGCuCUGC-UGGCG---GUUC--GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 38734 0.66 0.611602
Target:  5'- cGCCGuaccggcGGugGcCCGCCGcaggccGGUGAGCUGc -3'
miRNA:   3'- -CGGC-------UCugCuGGCGGU------UCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 38439 0.66 0.602186
Target:  5'- aGUCGAGAcCGAaaaUGCCGuGCGAGggcaCCGAg -3'
miRNA:   3'- -CGGCUCU-GCUg--GCGGUuCGCUC----GGCU- -5'
23386 5' -59 NC_005259.1 + 11314 0.66 0.602186
Target:  5'- gGCCGAGACGGgCGCgcAGCucGUCGu -3'
miRNA:   3'- -CGGCUCUGCUgGCGguUCGcuCGGCu -5'
23386 5' -59 NC_005259.1 + 31416 0.66 0.591746
Target:  5'- cCCGAGGuCG-CCGCUGAGCaacucguuGAGCCa- -3'
miRNA:   3'- cGGCUCU-GCuGGCGGUUCG--------CUCGGcu -5'
23386 5' -59 NC_005259.1 + 13929 0.66 0.591746
Target:  5'- aCCGAaccAUGACCGCCAAauCGAcGCCGGa -3'
miRNA:   3'- cGGCUc--UGCUGGCGGUUc-GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 39068 0.66 0.590704
Target:  5'- uGCCGAGcuugcugGCGucgaacaguCCGUUGAGCGGGuuGAg -3'
miRNA:   3'- -CGGCUC-------UGCu--------GGCGGUUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 13734 0.66 0.581337
Target:  5'- uGCCGuGAUGGCCcgcgagauauGCCAAGaccucGCCGAc -3'
miRNA:   3'- -CGGCuCUGCUGG----------CGGUUCgcu--CGGCU- -5'
23386 5' -59 NC_005259.1 + 64420 0.66 0.581337
Target:  5'- aGCCGuGAgGgAUCGCCGA-CGAGCUGc -3'
miRNA:   3'- -CGGCuCUgC-UGGCGGUUcGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 57254 0.66 0.580298
Target:  5'- uGCCGGGAacaGuCCGUUggGCGAGggauugaCCGGu -3'
miRNA:   3'- -CGGCUCUg--CuGGCGGuuCGCUC-------GGCU- -5'
23386 5' -59 NC_005259.1 + 52629 0.66 0.570967
Target:  5'- cGUCGAGcugcguCGGCUGUgGGGCGAGgUGAg -3'
miRNA:   3'- -CGGCUCu-----GCUGGCGgUUCGCUCgGCU- -5'
23386 5' -59 NC_005259.1 + 48412 0.66 0.570967
Target:  5'- cGUCGAGucaccGCGACCGCCAccacCGAGgCgCGAg -3'
miRNA:   3'- -CGGCUC-----UGCUGGCGGUuc--GCUC-G-GCU- -5'
23386 5' -59 NC_005259.1 + 58792 0.66 0.570967
Target:  5'- gGUCGAGGCGGugaUUGCCucGGCGGGCUc- -3'
miRNA:   3'- -CGGCUCUGCU---GGCGGu-UCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 56421 0.66 0.569932
Target:  5'- cGCCGAGcucaagcagagcaGCGAgCGCCGGGCcacgcagcucaGGGuuGAc -3'
miRNA:   3'- -CGGCUC-------------UGCUgGCGGUUCG-----------CUCggCU- -5'
23386 5' -59 NC_005259.1 + 16180 0.66 0.568898
Target:  5'- cGCCGAGGuccaaGAgaucauguccaccCCGCCugaguuccugaucAGGUGGGCCGAa -3'
miRNA:   3'- -CGGCUCUg----CU-------------GGCGG-------------UUCGCUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.