Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23391 | 3' | -50.7 | NC_005259.1 | + | 6539 | 0.66 | 0.945024 |
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Target: 5'- cGGCCUCGggGCGAGCGGuGAAGcuguGCGCg -3' miRNA: 3'- aCUGGGGC--UGCUCGUU-UUUCcu--UGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 41264 | 0.66 | 0.949754 |
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Target: 5'- -cGCCCCGGuCGAGCAcccucGucGGcGCACu -3' miRNA: 3'- acUGGGGCU-GCUCGUu----UuuCCuUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 34309 | 0.66 | 0.949754 |
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Target: 5'- cGACCCaCGACcAGCGGucacGGAACuCg -3' miRNA: 3'- aCUGGG-GCUGcUCGUUuuu-CCUUGuG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 24642 | 0.66 | 0.949754 |
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Target: 5'- cGcACCCCGACGA-CGAGAcugacgacGAGCGCg -3' miRNA: 3'- aC-UGGGGCUGCUcGUUUUuc------CUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 20565 | 0.66 | 0.954206 |
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Target: 5'- cGACCCCGA-GAuCAucGAGGcAUACg -3' miRNA: 3'- aCUGGGGCUgCUcGUuuUUCCuUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 32027 | 0.66 | 0.954206 |
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Target: 5'- aGuuCCCCGGCucaucgcaucGGGUugcuGAGGAACGCg -3' miRNA: 3'- aCu-GGGGCUG----------CUCGuuu-UUCCUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 13831 | 0.66 | 0.954206 |
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Target: 5'- gUGAUgaCCGACGGGCAcauugcccGGcGAACGCa -3' miRNA: 3'- -ACUGg-GGCUGCUCGUuuu-----UC-CUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 23671 | 0.66 | 0.954206 |
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Target: 5'- gGACCgCCGAcccCGAGC----AGGcGCACg -3' miRNA: 3'- aCUGG-GGCU---GCUCGuuuuUCCuUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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