miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23406 5' -52.8 NC_005259.1 + 53053 0.66 0.899893
Target:  5'- gGGAaauUGCuGCGUGaCGggguUGACAAGACCg -3'
miRNA:   3'- -UCU---GCGuCGCGC-GCau--GUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 21918 0.66 0.899893
Target:  5'- -uAC-CAGCGCGag-GCAGuCGAGGCCa -3'
miRNA:   3'- ucUGcGUCGCGCgcaUGUU-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 49320 0.66 0.899202
Target:  5'- cAGGCGCGagaauacGCGUcCGUACGACucAGGCg -3'
miRNA:   3'- -UCUGCGU-------CGCGcGCAUGUUGu-UCUGg -5'
23406 5' -52.8 NC_005259.1 + 24840 0.66 0.892864
Target:  5'- cGACcaaGCAGUccGUGCGcUACGcCGAGGCCc -3'
miRNA:   3'- uCUG---CGUCG--CGCGC-AUGUuGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 58769 0.66 0.892864
Target:  5'- cGACGCuGCggGCGCuGUGCGccgguCGAGGCg -3'
miRNA:   3'- uCUGCGuCG--CGCG-CAUGUu----GUUCUGg -5'
23406 5' -52.8 NC_005259.1 + 36242 0.66 0.892864
Target:  5'- -aGCGCgAGCGCcuGCGU-CGGCAGcGCCa -3'
miRNA:   3'- ucUGCG-UCGCG--CGCAuGUUGUUcUGG- -5'
23406 5' -52.8 NC_005259.1 + 2928 0.66 0.892864
Target:  5'- cGGA-GUAGCGaaaGCGUccaagGCGcGCGAGACCc -3'
miRNA:   3'- -UCUgCGUCGCg--CGCA-----UGU-UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 57441 0.66 0.892146
Target:  5'- -uACGCGGCGagGUugGUGCGACGcugcggcAGGCCg -3'
miRNA:   3'- ucUGCGUCGCg-CG--CAUGUUGU-------UCUGG- -5'
23406 5' -52.8 NC_005259.1 + 3190 0.66 0.88557
Target:  5'- cGuCGguGCGCGCaccACGAUguGGGGCCu -3'
miRNA:   3'- uCuGCguCGCGCGca-UGUUG--UUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 39826 0.66 0.88557
Target:  5'- -aGCGCAuugaGCGCGUuggucgGCGACAGGAUg -3'
miRNA:   3'- ucUGCGUcg--CGCGCA------UGUUGUUCUGg -5'
23406 5' -52.8 NC_005259.1 + 18960 0.66 0.877248
Target:  5'- aGGAUGgGGUGaccucgcCGCGUACAucgcccggcACGAGAUCg -3'
miRNA:   3'- -UCUGCgUCGC-------GCGCAUGU---------UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 32585 0.66 0.870211
Target:  5'- uGGGCaGCGGUuuacGCGCGUGCA---GGACg -3'
miRNA:   3'- -UCUG-CGUCG----CGCGCAUGUuguUCUGg -5'
23406 5' -52.8 NC_005259.1 + 67232 0.67 0.862158
Target:  5'- cGACcacgGCGGUGUagGgGUugAGCGGGGCCu -3'
miRNA:   3'- uCUG----CGUCGCG--CgCAugUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 2646 0.67 0.862158
Target:  5'- aGGGCGguGuCGCGgGcACGuuCAAGAUCa -3'
miRNA:   3'- -UCUGCguC-GCGCgCaUGUu-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 12027 0.67 0.853864
Target:  5'- -uACGguGCGgGCG-GCAACcgguacucaccGAGGCCg -3'
miRNA:   3'- ucUGCguCGCgCGCaUGUUG-----------UUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 26964 0.67 0.853864
Target:  5'- -uGCGCAGCGC-CGUGCcgAACucGGCg -3'
miRNA:   3'- ucUGCGUCGCGcGCAUG--UUGuuCUGg -5'
23406 5' -52.8 NC_005259.1 + 62837 0.67 0.853864
Target:  5'- cGAgGUcgAGCGCGCGguuGACGAGcaGCCg -3'
miRNA:   3'- uCUgCG--UCGCGCGCaugUUGUUC--UGG- -5'
23406 5' -52.8 NC_005259.1 + 33888 0.67 0.853864
Target:  5'- -cACGCGGgaaccaccCGCGCG-ACGGgcCGAGACCg -3'
miRNA:   3'- ucUGCGUC--------GCGCGCaUGUU--GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 55482 0.67 0.845338
Target:  5'- -cGCGUAGaugaGCGCGaACAccagcgucACGAGGCCc -3'
miRNA:   3'- ucUGCGUCg---CGCGCaUGU--------UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 56036 0.67 0.845338
Target:  5'- gGGACuuccucggGCGGCuGCGgGUACuugauggcguCGAGACCg -3'
miRNA:   3'- -UCUG--------CGUCG-CGCgCAUGuu--------GUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.