miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23425 3' -55.9 NC_005259.1 + 26403 0.66 0.753499
Target:  5'- cCGACGcCGGGC--GCGGCGGUGCcGCc -3'
miRNA:   3'- aGUUGC-GCUCGccUGCCGUCGUGuUG- -5'
23425 3' -55.9 NC_005259.1 + 51519 0.66 0.75248
Target:  5'- cUCGACGCGcGUgaccucgugcacgGGGCcgGGCAaguGCACGACg -3'
miRNA:   3'- -AGUUGCGCuCG-------------CCUG--CCGU---CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 45619 0.66 0.743257
Target:  5'- cUCGAUGCccGcCGGGCcgGGCAGCGCGc- -3'
miRNA:   3'- -AGUUGCGcuC-GCCUG--CCGUCGUGUug -5'
23425 3' -55.9 NC_005259.1 + 50238 0.66 0.743257
Target:  5'- -gAGCGCGGgcGCGGAUcGUGGC-CAACg -3'
miRNA:   3'- agUUGCGCU--CGCCUGcCGUCGuGUUG- -5'
23425 3' -55.9 NC_005259.1 + 57017 0.66 0.732905
Target:  5'- cUCAGCGCGGcucggcGCGGugGGgucGCACu-- -3'
miRNA:   3'- -AGUUGCGCU------CGCCugCCgu-CGUGuug -5'
23425 3' -55.9 NC_005259.1 + 40555 0.66 0.732905
Target:  5'- gUCGACGCGcgcccgcGCGGuguugcuguCGGCGGCucgcacCAGCa -3'
miRNA:   3'- -AGUUGCGCu------CGCCu--------GCCGUCGu-----GUUG- -5'
23425 3' -55.9 NC_005259.1 + 3858 0.66 0.722456
Target:  5'- gUCGACGCcggucGAGCGccuCGagcccaccccGCAGCGCGACa -3'
miRNA:   3'- -AGUUGCG-----CUCGCcu-GC----------CGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 27916 0.66 0.722456
Target:  5'- aCcGCGCGGGUGGuaGCGGUucGGCGaccCAGCu -3'
miRNA:   3'- aGuUGCGCUCGCC--UGCCG--UCGU---GUUG- -5'
23425 3' -55.9 NC_005259.1 + 49573 0.66 0.711919
Target:  5'- gUCGugGCcagaccGGCGGGCGGgguCAGCACcuCg -3'
miRNA:   3'- -AGUugCGc-----UCGCCUGCC---GUCGUGuuG- -5'
23425 3' -55.9 NC_005259.1 + 6285 0.66 0.701306
Target:  5'- cUCGugGuCGAGUGGuGCGGUaccgaugucgacGGCAUGACc -3'
miRNA:   3'- -AGUugC-GCUCGCC-UGCCG------------UCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 6202 0.66 0.701306
Target:  5'- gCAGCGUGAGCGGggugaGCcGCcGCGcCGACa -3'
miRNA:   3'- aGUUGCGCUCGCC-----UGcCGuCGU-GUUG- -5'
23425 3' -55.9 NC_005259.1 + 36396 0.67 0.694906
Target:  5'- cCAGCGCGAGCGacuuGAgcgccucaagggucaUGGUcuGCGCAGCg -3'
miRNA:   3'- aGUUGCGCUCGC----CU---------------GCCGu-CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 41087 0.67 0.690627
Target:  5'- gCAGC-CGgucguagucGGCGGuCGGCGGUAUGACg -3'
miRNA:   3'- aGUUGcGC---------UCGCCuGCCGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 42058 0.67 0.690627
Target:  5'- cUCGGgGUGGGCGGcuaGGUAuCGCAGCa -3'
miRNA:   3'- -AGUUgCGCUCGCCug-CCGUcGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 59400 0.67 0.684193
Target:  5'- --cGCGCGAGCGuGAccucgcgcauggcguCGGCGGCcaugaagaACGGCg -3'
miRNA:   3'- aguUGCGCUCGC-CU---------------GCCGUCG--------UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 50504 0.67 0.669116
Target:  5'- gUCGAUGUGGGCGG-UGcGCuGCACcucGACg -3'
miRNA:   3'- -AGUUGCGCUCGCCuGC-CGuCGUG---UUG- -5'
23425 3' -55.9 NC_005259.1 + 10440 0.67 0.668036
Target:  5'- cUCGACauCGAGUGGcucgACGGCGguguccuGCGCAGCg -3'
miRNA:   3'- -AGUUGc-GCUCGCC----UGCCGU-------CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 199 0.67 0.658305
Target:  5'- -uGGCGCGuGGCGcGACGGCAaGCAg--- -3'
miRNA:   3'- agUUGCGC-UCGC-CUGCCGU-CGUguug -5'
23425 3' -55.9 NC_005259.1 + 51792 0.67 0.658305
Target:  5'- uUCGGCGCucGGCGGGuCGGuCAGCucaGGCa -3'
miRNA:   3'- -AGUUGCGc-UCGCCU-GCC-GUCGug-UUG- -5'
23425 3' -55.9 NC_005259.1 + 52449 0.67 0.658305
Target:  5'- cUCGAUGUucGGCGGAUGGCAGacCACcGCc -3'
miRNA:   3'- -AGUUGCGc-UCGCCUGCCGUC--GUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.