miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 37236 0.66 0.82727
Target:  5'- uGGCCcGUGcCGgaUUGGCuGCCGCCGUUGc -3'
miRNA:   3'- -CCGGuCGCaGC--AGUUG-UGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 10269 0.66 0.82727
Target:  5'- gGGCCGGUcucaggcaauGUCGUCGuCAUCGagGUUGg -3'
miRNA:   3'- -CCGGUCG----------CAGCAGUuGUGGCggUAAC- -5'
23435 5' -54.6 NC_005259.1 + 53265 0.66 0.82727
Target:  5'- cGCCGcUGUCGcCggUGCCGCCAa-- -3'
miRNA:   3'- cCGGUcGCAGCaGuuGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 37971 0.66 0.818211
Target:  5'- uGGUCGGCaGUgCGUCGuACugCGCCu--- -3'
miRNA:   3'- -CCGGUCG-CA-GCAGU-UGugGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 22987 0.66 0.818211
Target:  5'- -cCCGGUGUCG---ACGCCGCCGa-- -3'
miRNA:   3'- ccGGUCGCAGCaguUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 31183 0.66 0.818211
Target:  5'- aGCCAGuCGgCGagGAUGCCGCCGa-- -3'
miRNA:   3'- cCGGUC-GCaGCagUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 30771 0.66 0.818211
Target:  5'- cGCCGGUGg---CAcCGCUGCCGUUGu -3'
miRNA:   3'- cCGGUCGCagcaGUuGUGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 3308 0.66 0.818211
Target:  5'- cGGCgAGCGcugCGUCGACGugagCGCCGg-- -3'
miRNA:   3'- -CCGgUCGCa--GCAGUUGUg---GCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 35665 0.66 0.803323
Target:  5'- uGGCCAGCG-CGgugguggugcacagCGACGCCGUg---- -3'
miRNA:   3'- -CCGGUCGCaGCa-------------GUUGUGGCGguaac -5'
23435 5' -54.6 NC_005259.1 + 65111 0.66 0.799529
Target:  5'- cGGUCAGUG-CGUCAccgucggcGCACCGgCGg-- -3'
miRNA:   3'- -CCGGUCGCaGCAGU--------UGUGGCgGUaac -5'
23435 5' -54.6 NC_005259.1 + 67975 0.66 0.799529
Target:  5'- cGCgCAGCGgCGUgGcCACCGCCGc-- -3'
miRNA:   3'- cCG-GUCGCaGCAgUuGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 61078 0.66 0.789928
Target:  5'- cGGCauaGGCGUCGUCGGC-CUcgggcuuguugaGCCAg-- -3'
miRNA:   3'- -CCGg--UCGCAGCAGUUGuGG------------CGGUaac -5'
23435 5' -54.6 NC_005259.1 + 49422 0.66 0.789928
Target:  5'- uGCCAGCGagaaacCGgcgAGCGCCGCC-UUGg -3'
miRNA:   3'- cCGGUCGCa-----GCag-UUGUGGCGGuAAC- -5'
23435 5' -54.6 NC_005259.1 + 17851 0.66 0.789928
Target:  5'- aGGCCAcccCGUgGUCAGCgauccuugaGCCGCUcgGUUGg -3'
miRNA:   3'- -CCGGUc--GCAgCAGUUG---------UGGCGG--UAAC- -5'
23435 5' -54.6 NC_005259.1 + 66262 0.67 0.780166
Target:  5'- cGGCCcGCGcCGggcggCGgcucACGCCGCCAc-- -3'
miRNA:   3'- -CCGGuCGCaGCa----GU----UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 48054 0.67 0.780166
Target:  5'- uGGCCacGGCGgg--UAGCGCCGCCGc-- -3'
miRNA:   3'- -CCGG--UCGCagcaGUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 5716 0.67 0.770254
Target:  5'- aGGCCAGCGcCG--GACGgCgGCCAUUc -3'
miRNA:   3'- -CCGGUCGCaGCagUUGU-GgCGGUAAc -5'
23435 5' -54.6 NC_005259.1 + 7658 0.67 0.770254
Target:  5'- cGCCGuCGUCGUgAGCGCCccGCCucgUGg -3'
miRNA:   3'- cCGGUcGCAGCAgUUGUGG--CGGua-AC- -5'
23435 5' -54.6 NC_005259.1 + 67214 0.67 0.770254
Target:  5'- uGUCGGCGggGUCGAUGCCGaCCAc-- -3'
miRNA:   3'- cCGGUCGCagCAGUUGUGGC-GGUaac -5'
23435 5' -54.6 NC_005259.1 + 8027 0.67 0.770254
Target:  5'- cGGCCAccccguuucGCGaacUGUcCGACACCGCCGg-- -3'
miRNA:   3'- -CCGGU---------CGCa--GCA-GUUGUGGCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.