miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 4876 0.73 0.180993
Target:  5'- cCCGCCACCA----UCCCGCCg--GGCg -3'
miRNA:   3'- -GGCGGUGGUugucGGGGCGGuuaCCG- -5'
2345 5' -58.5 NC_001416.1 + 1090 0.73 0.180993
Target:  5'- gUCGCUGCUGGCgcuGGCCCCGUgGuAUGGCa -3'
miRNA:   3'- -GGCGGUGGUUG---UCGGGGCGgU-UACCG- -5'
2345 5' -58.5 NC_001416.1 + 20087 0.74 0.154044
Target:  5'- gCGCCGCCAGCAcgUCCGCCGGacaGGCu -3'
miRNA:   3'- gGCGGUGGUUGUcgGGGCGGUUa--CCG- -5'
2345 5' -58.5 NC_001416.1 + 5896 0.75 0.134422
Target:  5'- gCaCCACCGACGGUgCUGCCGuUGGCa -3'
miRNA:   3'- gGcGGUGGUUGUCGgGGCGGUuACCG- -5'
2345 5' -58.5 NC_001416.1 + 5979 0.77 0.101919
Target:  5'- aCCGCaagaauGCCAACGGCagcaCCGUCGGUGGUg -3'
miRNA:   3'- -GGCGg-----UGGUUGUCGg---GGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12721 1.13 0.000201
Target:  5'- gCCGCCACCAACAGCCCCGCCAAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUGUCGGGGCGGUUACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.