Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23453 | 5' | -56.9 | NC_005259.1 | + | 37018 | 0.66 | 0.714877 |
Target: 5'- --cGCCGGggaacaugacaaUGU-CGAucuuggugcccGCCACCGCCCa -3' miRNA: 3'- ucaCGGUC------------ACAuGCU-----------UGGUGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 20069 | 0.66 | 0.714877 |
Target: 5'- cGGUGgCGGUcGUcaccACGucgaAACCACCGaCCCGu -3' miRNA: 3'- -UCACgGUCA-CA----UGC----UUGGUGGC-GGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 66708 | 0.66 | 0.714877 |
Target: 5'- uGGUGUC-GUGcACGAugaugcCCGCCGCCaCGc -3' miRNA: 3'- -UCACGGuCACaUGCUu-----GGUGGCGG-GC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 1040 | 0.66 | 0.714877 |
Target: 5'- uGUGCCGG-GUACGGuCCGaguucaCGCUCa -3' miRNA: 3'- uCACGGUCaCAUGCUuGGUg-----GCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 39853 | 0.66 | 0.712793 |
Target: 5'- aGGaUGCCGGUGagcuucucauagagcUGCGcccAcaccgaaucguugucGCCGCCGCCCGc -3' miRNA: 3'- -UC-ACGGUCAC---------------AUGC---U---------------UGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 61948 | 0.66 | 0.707569 |
Target: 5'- gGGUGCCGGggccaccgcagccucACGcGCCGCUGCCuCGa -3' miRNA: 3'- -UCACGGUCaca------------UGCuUGGUGGCGG-GC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 40454 | 0.66 | 0.704426 |
Target: 5'- -cUGCCGGUGUgguugACGuacuGCCggGCCGCgCGg -3' miRNA: 3'- ucACGGUCACA-----UGCu---UGG--UGGCGgGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 20155 | 0.66 | 0.704426 |
Target: 5'- --aGCCGGUGccCuGGCCACCgcGCCCGc -3' miRNA: 3'- ucaCGGUCACauGcUUGGUGG--CGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 14468 | 0.66 | 0.704426 |
Target: 5'- gGGUGCCuucacgcucGUGgucCGAuCCGCUGCUCGg -3' miRNA: 3'- -UCACGGu--------CACau-GCUuGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 35046 | 0.66 | 0.693909 |
Target: 5'- --aGCCGGaugaUGUcgcCGGACaCGCCGCCCu -3' miRNA: 3'- ucaCGGUC----ACAu--GCUUG-GUGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 18628 | 0.66 | 0.693909 |
Target: 5'- uGUGCCGcgcaucgccccGUucucgcauugGcGCGAuauGCCGCCGCCCGa -3' miRNA: 3'- uCACGGU-----------CA----------CaUGCU---UGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 25932 | 0.66 | 0.693909 |
Target: 5'- cGGU-CCGGUGaGCGcacGCCGgUGCCCGg -3' miRNA: 3'- -UCAcGGUCACaUGCu--UGGUgGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 66660 | 0.66 | 0.692854 |
Target: 5'- cGGUcGgCGGUGcUGCGAugCucaucguGCCGCCCa -3' miRNA: 3'- -UCA-CgGUCAC-AUGCUugG-------UGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 50680 | 0.66 | 0.683335 |
Target: 5'- --cGUCGGUGccgACGAGgCGCUGCUCGu -3' miRNA: 3'- ucaCGGUCACa--UGCUUgGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 26498 | 0.66 | 0.683335 |
Target: 5'- --cGCC-----GCGAGCuCGCCGCCCGg -3' miRNA: 3'- ucaCGGucacaUGCUUG-GUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 40263 | 0.66 | 0.683335 |
Target: 5'- cAGUGCCcauAGUGacACGAACacuCACCGCgCCc -3' miRNA: 3'- -UCACGG---UCACa-UGCUUG---GUGGCG-GGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 33232 | 0.66 | 0.672714 |
Target: 5'- --cGCCGGUcaccgcGUACGuGCCAgauCUGCCCGc -3' miRNA: 3'- ucaCGGUCA------CAUGCuUGGU---GGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 32980 | 0.66 | 0.672714 |
Target: 5'- gGGUGCCGaUGc-CGAggguGCCGCCacGCCCGa -3' miRNA: 3'- -UCACGGUcACauGCU----UGGUGG--CGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 3109 | 0.66 | 0.662057 |
Target: 5'- cGGgcgGCCAuugcgcggcaccGUGggcaGCGGACggCACCGCCCGu -3' miRNA: 3'- -UCa--CGGU------------CACa---UGCUUG--GUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 3679 | 0.67 | 0.640675 |
Target: 5'- --aGCCAGau--CGucACCGCCGCCCa -3' miRNA: 3'- ucaCGGUCacauGCu-UGGUGGCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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