miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23453 5' -56.9 NC_005259.1 + 1040 0.66 0.714877
Target:  5'- uGUGCCGG-GUACGGuCCGaguucaCGCUCa -3'
miRNA:   3'- uCACGGUCaCAUGCUuGGUg-----GCGGGc -5'
23453 5' -56.9 NC_005259.1 + 66708 0.66 0.714877
Target:  5'- uGGUGUC-GUGcACGAugaugcCCGCCGCCaCGc -3'
miRNA:   3'- -UCACGGuCACaUGCUu-----GGUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 20069 0.66 0.714877
Target:  5'- cGGUGgCGGUcGUcaccACGucgaAACCACCGaCCCGu -3'
miRNA:   3'- -UCACgGUCA-CA----UGC----UUGGUGGC-GGGC- -5'
23453 5' -56.9 NC_005259.1 + 37018 0.66 0.714877
Target:  5'- --cGCCGGggaacaugacaaUGU-CGAucuuggugcccGCCACCGCCCa -3'
miRNA:   3'- ucaCGGUC------------ACAuGCU-----------UGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 39853 0.66 0.712793
Target:  5'- aGGaUGCCGGUGagcuucucauagagcUGCGcccAcaccgaaucguugucGCCGCCGCCCGc -3'
miRNA:   3'- -UC-ACGGUCAC---------------AUGC---U---------------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 61948 0.66 0.707569
Target:  5'- gGGUGCCGGggccaccgcagccucACGcGCCGCUGCCuCGa -3'
miRNA:   3'- -UCACGGUCaca------------UGCuUGGUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 40454 0.66 0.704426
Target:  5'- -cUGCCGGUGUgguugACGuacuGCCggGCCGCgCGg -3'
miRNA:   3'- ucACGGUCACA-----UGCu---UGG--UGGCGgGC- -5'
23453 5' -56.9 NC_005259.1 + 20155 0.66 0.704426
Target:  5'- --aGCCGGUGccCuGGCCACCgcGCCCGc -3'
miRNA:   3'- ucaCGGUCACauGcUUGGUGG--CGGGC- -5'
23453 5' -56.9 NC_005259.1 + 14468 0.66 0.704426
Target:  5'- gGGUGCCuucacgcucGUGgucCGAuCCGCUGCUCGg -3'
miRNA:   3'- -UCACGGu--------CACau-GCUuGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 25932 0.66 0.693909
Target:  5'- cGGU-CCGGUGaGCGcacGCCGgUGCCCGg -3'
miRNA:   3'- -UCAcGGUCACaUGCu--UGGUgGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 18628 0.66 0.693909
Target:  5'- uGUGCCGcgcaucgccccGUucucgcauugGcGCGAuauGCCGCCGCCCGa -3'
miRNA:   3'- uCACGGU-----------CA----------CaUGCU---UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 35046 0.66 0.693909
Target:  5'- --aGCCGGaugaUGUcgcCGGACaCGCCGCCCu -3'
miRNA:   3'- ucaCGGUC----ACAu--GCUUG-GUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 66660 0.66 0.692854
Target:  5'- cGGUcGgCGGUGcUGCGAugCucaucguGCCGCCCa -3'
miRNA:   3'- -UCA-CgGUCAC-AUGCUugG-------UGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 26498 0.66 0.683335
Target:  5'- --cGCC-----GCGAGCuCGCCGCCCGg -3'
miRNA:   3'- ucaCGGucacaUGCUUG-GUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 40263 0.66 0.683335
Target:  5'- cAGUGCCcauAGUGacACGAACacuCACCGCgCCc -3'
miRNA:   3'- -UCACGG---UCACa-UGCUUG---GUGGCG-GGc -5'
23453 5' -56.9 NC_005259.1 + 50680 0.66 0.683335
Target:  5'- --cGUCGGUGccgACGAGgCGCUGCUCGu -3'
miRNA:   3'- ucaCGGUCACa--UGCUUgGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 32980 0.66 0.672714
Target:  5'- gGGUGCCGaUGc-CGAggguGCCGCCacGCCCGa -3'
miRNA:   3'- -UCACGGUcACauGCU----UGGUGG--CGGGC- -5'
23453 5' -56.9 NC_005259.1 + 33232 0.66 0.672714
Target:  5'- --cGCCGGUcaccgcGUACGuGCCAgauCUGCCCGc -3'
miRNA:   3'- ucaCGGUCA------CAUGCuUGGU---GGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 3109 0.66 0.662057
Target:  5'- cGGgcgGCCAuugcgcggcaccGUGggcaGCGGACggCACCGCCCGu -3'
miRNA:   3'- -UCa--CGGU------------CACa---UGCUUG--GUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 3679 0.67 0.640675
Target:  5'- --aGCCAGau--CGucACCGCCGCCCa -3'
miRNA:   3'- ucaCGGUCacauGCu-UGGUGGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.