miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23454 5' -56.8 NC_005259.1 + 41869 0.66 0.666623
Target:  5'- -cGAcgGGCa--GCACcg-UGGCGGGCc -3'
miRNA:   3'- aaCUa-CCGgcgCGUGuuaACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 43918 0.66 0.641587
Target:  5'- -cGAUGGgcagcgacgacaCCGCGCuacugacagcgucgGCGAUgGGCGGGg -3'
miRNA:   3'- aaCUACC------------GGCGCG--------------UGUUAaCCGCCCg -5'
23454 5' -56.8 NC_005259.1 + 44480 0.66 0.633953
Target:  5'- ---cUGGCCGgGC-CAGUUGGUgacguagaccgGGGUg -3'
miRNA:   3'- aacuACCGGCgCGuGUUAACCG-----------CCCG- -5'
23454 5' -56.8 NC_005259.1 + 55293 0.66 0.63068
Target:  5'- aUUGAgggacguuUGGCCGCGUgcgACGAccacagggguggucUUGGCGGcaGCg -3'
miRNA:   3'- -AACU--------ACCGGCGCG---UGUU--------------AACCGCC--CG- -5'
23454 5' -56.8 NC_005259.1 + 18763 0.66 0.623046
Target:  5'- -cGAcaUGGCCuGC-CACAucgcGGUGGGCa -3'
miRNA:   3'- aaCU--ACCGG-CGcGUGUuaa-CCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 26020 0.66 0.621956
Target:  5'- -gGAUGGCCGCaaGCGgGUUGGCcagcagcgccgccGGGUu -3'
miRNA:   3'- aaCUACCGGCGcgUGU-UAACCG-------------CCCG- -5'
23454 5' -56.8 NC_005259.1 + 43311 0.67 0.612148
Target:  5'- cUGaAUGGCUGCGUugGccaccgccUUGGCgauGGGCa -3'
miRNA:   3'- aAC-UACCGGCGCGugUu-------AACCG---CCCG- -5'
23454 5' -56.8 NC_005259.1 + 42531 0.67 0.601266
Target:  5'- ----cGGCCccgauGgGCACcgaggUGGCGGGCa -3'
miRNA:   3'- aacuaCCGG-----CgCGUGuua--ACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 8640 0.67 0.601266
Target:  5'- -aGaAUGGCgG-GCACGAggcugUGGuCGGGCu -3'
miRNA:   3'- aaC-UACCGgCgCGUGUUa----ACC-GCCCG- -5'
23454 5' -56.8 NC_005259.1 + 64889 0.67 0.568811
Target:  5'- gUUGAUGaGCCGCGUgacACGAgcgacGGCGaGCg -3'
miRNA:   3'- -AACUAC-CGGCGCG---UGUUaa---CCGCcCG- -5'
23454 5' -56.8 NC_005259.1 + 51416 0.67 0.558083
Target:  5'- -cGAggGGCCG-GUugAGgucuugGGCGGGCc -3'
miRNA:   3'- aaCUa-CCGGCgCGugUUaa----CCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 39504 0.67 0.558083
Target:  5'- cUUGAUGGCCGCGC-CGc-UGGCcaccaguccGGCc -3'
miRNA:   3'- -AACUACCGGCGCGuGUuaACCGc--------CCG- -5'
23454 5' -56.8 NC_005259.1 + 25747 0.68 0.548478
Target:  5'- -gGAccGCCGCGCACAcuauaccgcuauGCGGGCa -3'
miRNA:   3'- aaCUacCGGCGCGUGUuaac--------CGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 4991 0.68 0.526277
Target:  5'- -cGAUGGCCGgGCACuac-GGCaaGGUg -3'
miRNA:   3'- aaCUACCGGCgCGUGuuaaCCGc-CCG- -5'
23454 5' -56.8 NC_005259.1 + 41478 0.68 0.515824
Target:  5'- gUGAc-GCCGUcgaGCACGAccucggcggUGGCGGGCa -3'
miRNA:   3'- aACUacCGGCG---CGUGUUa--------ACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 40867 0.68 0.509592
Target:  5'- --cAUGGCCGCcCACAGcucaccggccaccgUGGCGGGg -3'
miRNA:   3'- aacUACCGGCGcGUGUUa-------------ACCGCCCg -5'
23454 5' -56.8 NC_005259.1 + 40108 0.69 0.495177
Target:  5'- -cGAgucGGCgaaUGCGCucguGgAAUUGGCGGGCg -3'
miRNA:   3'- aaCUa--CCG---GCGCG----UgUUAACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 47961 0.69 0.474914
Target:  5'- -cGAUGGCCGcCGCGCcgcccgcgAAUaUGcCGGGCa -3'
miRNA:   3'- aaCUACCGGC-GCGUG--------UUA-ACcGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 15394 0.69 0.464938
Target:  5'- --cGUGGCCGCGCACucccaagGGUGcGCu -3'
miRNA:   3'- aacUACCGGCGCGUGuuaa---CCGCcCG- -5'
23454 5' -56.8 NC_005259.1 + 63865 0.69 0.445322
Target:  5'- -aGGUGGCCG-GCugGccUUGcGUGGGCg -3'
miRNA:   3'- aaCUACCGGCgCGugUu-AAC-CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.