miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23460 5' -56 NC_005259.1 + 53516 0.66 0.741496
Target:  5'- cGUGCucGUGGcCAGCGGCAcgggcuCGGUGCCc -3'
miRNA:   3'- -CAUG--CGCUuGUUGCCGUc-----GCCACGGu -5'
23460 5' -56 NC_005259.1 + 20640 0.66 0.741496
Target:  5'- cGUuCGCGAcacguuCGGCGGCAcCGGgGCCGa -3'
miRNA:   3'- -CAuGCGCUu-----GUUGCCGUcGCCaCGGU- -5'
23460 5' -56 NC_005259.1 + 53609 0.66 0.73112
Target:  5'- cGU-CGgGGuCAGCaGGCgucgAGCGGUGCCGu -3'
miRNA:   3'- -CAuGCgCUuGUUG-CCG----UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 40132 0.66 0.73112
Target:  5'- aUugGCGGGCGAgcucgccguCGGUuGuCGGUGCCc -3'
miRNA:   3'- cAugCGCUUGUU---------GCCGuC-GCCACGGu -5'
23460 5' -56 NC_005259.1 + 41308 0.66 0.719595
Target:  5'- --cCGUGAGCGcgaGGUcgaccucgaaaagGGCGGUGCCGu -3'
miRNA:   3'- cauGCGCUUGUug-CCG-------------UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 57440 0.66 0.714322
Target:  5'- uUACGCGGcgagguuggugcgacGCuGCGGCAGgcCGGUGgCAc -3'
miRNA:   3'- cAUGCGCU---------------UGuUGCCGUC--GCCACgGU- -5'
23460 5' -56 NC_005259.1 + 19099 0.66 0.710089
Target:  5'- cUGCGCGAACucacCGGCGcUGGUGUg- -3'
miRNA:   3'- cAUGCGCUUGuu--GCCGUcGCCACGgu -5'
23460 5' -56 NC_005259.1 + 14521 0.66 0.710089
Target:  5'- ---gGCGAGCAcGCGGUgcguuuCGGUGCCGa -3'
miRNA:   3'- caugCGCUUGU-UGCCGuc----GCCACGGU- -5'
23460 5' -56 NC_005259.1 + 68702 0.66 0.699456
Target:  5'- -gAgGCGGGCAGC-GCGuCGGUGCCc -3'
miRNA:   3'- caUgCGCUUGUUGcCGUcGCCACGGu -5'
23460 5' -56 NC_005259.1 + 38161 0.66 0.699456
Target:  5'- -cGCGCcGAUGACGGUgauCGGUGCCu -3'
miRNA:   3'- caUGCGcUUGUUGCCGuc-GCCACGGu -5'
23460 5' -56 NC_005259.1 + 44156 0.66 0.699456
Target:  5'- cGUGCGguCGAGCAGCGcGC--CGGUGUCGg -3'
miRNA:   3'- -CAUGC--GCUUGUUGC-CGucGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 400 0.66 0.688759
Target:  5'- -cGgGCGAAUAcCaGCAGCGcGUGCCc -3'
miRNA:   3'- caUgCGCUUGUuGcCGUCGC-CACGGu -5'
23460 5' -56 NC_005259.1 + 41793 0.66 0.688759
Target:  5'- ---gGCGAGCAGuCGGCAGgCGGUuuGCa- -3'
miRNA:   3'- caugCGCUUGUU-GCCGUC-GCCA--CGgu -5'
23460 5' -56 NC_005259.1 + 37043 0.66 0.688759
Target:  5'- cUugGUGccCGccaccgcccACGGCGGCGGUGuCCAc -3'
miRNA:   3'- cAugCGCuuGU---------UGCCGUCGCCAC-GGU- -5'
23460 5' -56 NC_005259.1 + 4262 0.67 0.67801
Target:  5'- cUGCGaGGACAacggGCGGCuGCGcUGCCAc -3'
miRNA:   3'- cAUGCgCUUGU----UGCCGuCGCcACGGU- -5'
23460 5' -56 NC_005259.1 + 50410 0.67 0.674776
Target:  5'- -aGCGCGccggugccuugaccGGCucgGGCAGCGGUGCgGg -3'
miRNA:   3'- caUGCGC--------------UUGuugCCGUCGCCACGgU- -5'
23460 5' -56 NC_005259.1 + 33724 0.67 0.667218
Target:  5'- cUGCGCGAugAugucGCGuGgAGCGGUGUg- -3'
miRNA:   3'- cAUGCGCUugU----UGC-CgUCGCCACGgu -5'
23460 5' -56 NC_005259.1 + 21191 0.67 0.645548
Target:  5'- -gGCGCGAGCAccaaGCuGCAa-GGUGCCGa -3'
miRNA:   3'- caUGCGCUUGU----UGcCGUcgCCACGGU- -5'
23460 5' -56 NC_005259.1 + 39393 0.67 0.645548
Target:  5'- -cACGCuGAGCu-UGGUccaccccgaGGCGGUGCCGg -3'
miRNA:   3'- caUGCG-CUUGuuGCCG---------UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 59400 0.67 0.645548
Target:  5'- -cGCGCGAGCGugaccucgcgcAUGGCGuCGGcgGCCAu -3'
miRNA:   3'- caUGCGCUUGU-----------UGCCGUcGCCa-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.