miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 51227 0.66 0.679098
Target:  5'- cCGCCGGAUcguaggCCCGGUACgUca-CGCCg -3'
miRNA:   3'- cGCGGCCUG------GGGCUAUGgGuugGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68806 0.66 0.679098
Target:  5'- gGUGUCGGugCCCGGUACau-GCUcUCg -3'
miRNA:   3'- -CGCGGCCugGGGCUAUGgguUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 16454 0.66 0.679098
Target:  5'- cCGUCGG-CaUCGGUACCCcGCCGCa -3'
miRNA:   3'- cGCGGCCuGgGGCUAUGGGuUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 40827 0.66 0.675982
Target:  5'- cGCGCacgauGGGCCgcgugUUGAUGCCCugcgccucgaccauGGCCGCCc -3'
miRNA:   3'- -CGCGg----CCUGG-----GGCUAUGGG--------------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 47927 0.66 0.672862
Target:  5'- uCGCCGaGGCCCUGgAagccgaugacggcggUGCCgAugGCCGCCg -3'
miRNA:   3'- cGCGGC-CUGGGGC-U---------------AUGGgU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36138 0.66 0.668697
Target:  5'- cCGCCGGGCUguCCGucGCCaUGGCCACg -3'
miRNA:   3'- cGCGGCCUGG--GGCuaUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 55504 0.66 0.668697
Target:  5'- aGCGUcaCGaGGCCCacagCGAacugUGCCCAcagcGCCGCCu -3'
miRNA:   3'- -CGCG--GC-CUGGG----GCU----AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18408 0.66 0.668697
Target:  5'- uCGCC-GAgCCCGc-GCCCG-CCACCu -3'
miRNA:   3'- cGCGGcCUgGGGCuaUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55590 0.66 0.668697
Target:  5'- cGCGCUGG-CCaCgCGAUACCaCGucucGCgCGCCu -3'
miRNA:   3'- -CGCGGCCuGG-G-GCUAUGG-GU----UG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 48398 0.66 0.668697
Target:  5'- cCGCCGacGCCCgccguCGAgucACCgCGACCGCCa -3'
miRNA:   3'- cGCGGCc-UGGG-----GCUa--UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37656 0.66 0.668697
Target:  5'- cCGCCGccGCCgCCGGUGCC--GCCACg -3'
miRNA:   3'- cGCGGCc-UGG-GGCUAUGGguUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 60504 0.66 0.66557
Target:  5'- cGCGCCGGuguugucguagugcGCCauggccgggCCGggACgCAGCCGCUc -3'
miRNA:   3'- -CGCGGCC--------------UGG---------GGCuaUGgGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20477 0.66 0.658264
Target:  5'- cCGCCGucGACCUCGAcaccGCCCGGCaGCUc -3'
miRNA:   3'- cGCGGC--CUGGGGCUa---UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 51349 0.66 0.658264
Target:  5'- -aGCuCGGAUaugCCCGGUgGCaCCGGCaCACCg -3'
miRNA:   3'- cgCG-GCCUG---GGGCUA-UG-GGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 13465 0.66 0.658264
Target:  5'- gGCGCUGGugcucACCgCGcUGCCCGACgAUg -3'
miRNA:   3'- -CGCGGCC-----UGGgGCuAUGGGUUGgUGg -5'
23476 3' -58.3 NC_005259.1 + 27262 0.66 0.64781
Target:  5'- cGCGuaGGACCgauaCGccGCCUugAGCCGCCg -3'
miRNA:   3'- -CGCggCCUGGg---GCuaUGGG--UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46925 0.66 0.64781
Target:  5'- uGCGCCG----CCGAgcuUGCCCGccgcGCCGCCg -3'
miRNA:   3'- -CGCGGCcuggGGCU---AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 16229 0.66 0.64781
Target:  5'- uGgGCCGaacgcACCCCGGUGCU--GCgCACCg -3'
miRNA:   3'- -CgCGGCc----UGGGGCUAUGGguUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 58786 0.66 0.64467
Target:  5'- uGCGCCGGucgaggcggugauuGCCUCGGcgggcucgcgcUGCUCGgcacccucGCCGCCc -3'
miRNA:   3'- -CGCGGCC--------------UGGGGCU-----------AUGGGU--------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 8973 0.66 0.637342
Target:  5'- cGUGCCgGGACgUaGGUGCCagcggcgacggCAGCCGCCu -3'
miRNA:   3'- -CGCGG-CCUGgGgCUAUGG-----------GUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.